SRS20649046 SAMN40239873 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.48 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649047 SAMN40239874 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.848 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 38,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649048 SAMN40239883 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-17 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.674 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240117 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649049 SAMN40239975 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0582 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649050 SAMN40239973 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.8 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649051 SAMN40239976 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 36.89 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 63,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649052 SAMN40239974 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.414 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649053 SAMN40239977 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.38 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649054 SAMN40239978 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.62 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649055 SAMN40239981 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.676764 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 9,600 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649056 SAMN40239884 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.01 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649057 SAMN40239982 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.058 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 36,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649058 SAMN40239979 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.38 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 54,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649059 SAMN40239983 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-28 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 54.45 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240128 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 9,600 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649060 SAMN40239980 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.9 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649061 SAMN40239984 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649062 SAMN40239985 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.154 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 13,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649063 SAMN40239987 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.17 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 47,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649064 SAMN40239989 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.203 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id OU20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 11,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649065 SAMN40239988 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.767 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649066 SAMN40239991 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.223 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649067 SAMN40239992 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.502 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649068 SAMN40239986 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.11 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 68,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649069 SAMN40239885 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.5 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649070 SAMN40239993 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.196 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 46,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649071 SAMN40239990 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.4 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 97,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649072 SAMN40239994 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.411 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649073 SAMN40239996 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.54 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649074 SAMN40239997 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.752 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 79,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649075 SAMN40239999 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.4 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 41,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649076 SAMN40240000 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.17 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6,400 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649077 SAMN40239995 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.073 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649078 SAMN40240001 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.7 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649079 SAMN40240002 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.64 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 91,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649080 SAMN40239998 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.418 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 71,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649081 SAMN40239886 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.96 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 34,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649082 SAMN40240004 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-21 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.6 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240121 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649083 SAMN40240005 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.3 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 48,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649084 SAMN40240006 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.04 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 83,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649085 SAMN40240008 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.305 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 88,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649086 SAMN40240009 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.603 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649087 SAMN40240010 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.066005 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 29,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649088 SAMN40240011 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649089 SAMN40240012 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649090 SAMN40239887 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.7 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649091 SAMN40240013 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.591 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649092 SAMN40240079 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.69 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 53,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649093 SAMN40240081 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5198 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 22,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649094 SAMN40240082 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.185 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id OU20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 420,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649095 SAMN40240080 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.228 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 66,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649096 SAMN40239894 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.2 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 22,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649097 SAMN40240083 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.054094 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 41,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649098 SAMN40240084 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.28 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 86,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649099 SAMN40240086 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0855 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 270,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649100 SAMN40240085 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.726 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 570,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649101 SAMN40240087 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.341 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 43,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649102 SAMN40240088 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.946 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 96,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649103 SAMN40240089 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.02 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 79,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649104 SAMN40240090 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.6 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649105 SAMN40240091 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.793 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 39,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649106 SAMN40240092 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.203 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 61,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649107 SAMN40239895 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.39 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 39,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649108 SAMN40240093 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.14 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 70,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649109 SAMN40240094 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0628 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,500,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649110 SAMN40240095 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.567 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 85,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649111 SAMN40240096 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649112 SAMN40240003 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.08761 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649113 SAMN40240007 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.62 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 24,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649114 SAMN40240097 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.89267 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649115 SAMN40240098 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.2 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 27,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649116 SAMN40240099 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 30 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649117 SAMN40239946 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.42 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 53,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649118 SAMN40239948 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.229 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 69,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649119 SAMN40240100 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.393 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649120 SAMN40239949 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649121 SAMN40239947 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.086 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649122 SAMN40239950 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.446 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649123 SAMN40239951 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.93 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 23,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649124 SAMN40239952 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5153 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 34,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649125 SAMN40239881 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.94 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649126 SAMN40239954 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.197 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id OU20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 530,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649127 SAMN40239953 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0431 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 1,900 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649128 SAMN40239956 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.14 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 23,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649129 SAMN40239957 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.228 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 48,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649130 SAMN40239955 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.19 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649131 SAMN40239958 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.415 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649132 SAMN40239962 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 54.89 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 34,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649133 SAMN40239961 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.904 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,300 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649134 SAMN40239959 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.888 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 86,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649135 SAMN40239960 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.63 MGD instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649136 SAMN40239882 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.206 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649137 SAMN40239964 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 34.73 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 47,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649138 SAMN40239965 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649139 SAMN40239963 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-31 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.24 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240131 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 33,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649140 SAMN40240014 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5307 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 78,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649141 SAMN40240015 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.215 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 80,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649142 SAMN40240016 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.301 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649143 SAMN40239966 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.58 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649144 SAMN40240019 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.944 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649145 SAMN40240018 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.677 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649146 SAMN40240017 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.0204 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 76,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649147 SAMN40239967 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649148 SAMN40240020 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649149 SAMN40240022 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.82 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 17,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649150 SAMN40239888 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.2718 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649151 SAMN40240025 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 61.63 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649152 SAMN40240021 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 36.36 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 47,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649153 SAMN40240023 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649154 SAMN40240024 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-15 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.551 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240115 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649155 SAMN40240026 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.98 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649156 SAMN40240027 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.657 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 46,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649157 SAMN40240028 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.35 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649158 SAMN40240031 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649159 SAMN40240029 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-21 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.883 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240121 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649160 SAMN40239889 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-17 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 17.4 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240117 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 96,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649161 SAMN40240030 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.914 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649162 SAMN40240032 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-17 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 12.416 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240117 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 25,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649163 SAMN40240033 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.58 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 94,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649164 SAMN40240034 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-23 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.533 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240123 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649165 SAMN40240101 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.371 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 59,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649166 SAMN40240103 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.218 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 78,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649167 SAMN40240104 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.246 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 52,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649168 SAMN40240105 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-17 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.6 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240117 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649169 SAMN40240106 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.963 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 27,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649170 SAMN40240107 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.384 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649171 SAMN40240108 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4862 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649172 SAMN40240109 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.115 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8,400 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649173 SAMN40240110 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-17 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.17 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240117 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 82,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649174 SAMN40240111 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.719 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 330,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649175 SAMN40240112 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.08 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 53,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649176 SAMN40239897 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.43 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 43,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649177 SAMN40240113 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-19 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.305 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20240119 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649178 SAMN40240114 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.269 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 71,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649179 SAMN40240115 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.61 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649180 SAMN40240035 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-23 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4766 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240123 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 20,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649181 SAMN40239896 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.218 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649182 SAMN40240102 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 73,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649183 SAMN40240116 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-17 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.18 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240117 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 61,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649184 SAMN40240117 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.98736 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 89,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649185 SAMN40239898 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.64 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8,500 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649186 SAMN40239901 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .625 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 43,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649187 SAMN40239968 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.97 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 23,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649188 SAMN40239899 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.981 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6,600 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649189 SAMN40239900 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.323 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 86,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649190 SAMN40239969 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.284 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 260,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649191 SAMN40239902 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 37.25 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 36,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649192 SAMN40239971 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.120153 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 11,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649193 SAMN40239970 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649194 SAMN40240036 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-23 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.744 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240123 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 27,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649195 SAMN40240039 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.417 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 13,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649196 SAMN40240040 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.704 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 86,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649197 SAMN40240041 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.708 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 320,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649198 SAMN40240042 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4578 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649199 SAMN40240043 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.25 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 410,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649200 SAMN40239890 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.568 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649201 SAMN40240044 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.63878 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649202 SAMN40240045 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649203 SAMN40240046 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.6 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 61,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649204 SAMN40240037 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.13 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 30,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649205 SAMN40240038 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-23 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0328 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240123 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649206 SAMN40239972 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-02-01 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4838 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240201 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649207 SAMN40240047 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.182 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649208 SAMN40240048 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.736 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 46,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649209 SAMN40240049 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.07 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 22,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649210 SAMN40239891 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.713 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649211 SAMN40240053 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .647 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649212 SAMN40240054 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 17.71 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 82,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649213 SAMN40240055 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.064 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649214 SAMN40240056 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.864 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 90,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649215 SAMN40240057 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.0096 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649216 SAMN40240050 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-26 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.772 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240126 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 26,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649217 SAMN40240051 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-26 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.189 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20240126 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649218 SAMN40240052 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.05 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649219 SAMN40239876 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649220 SAMN40239903 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-19 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.766 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240119 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 24,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649221 SAMN40239904 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.191 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649222 SAMN40239905 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.4 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 99,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649223 SAMN40239909 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649224 SAMN40239910 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.08 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649225 SAMN40239906 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4441 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 69,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649226 SAMN40239908 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.199 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 84,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649227 SAMN40239907 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.414 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 68,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649228 SAMN40239911 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.16 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 56,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649229 SAMN40239912 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.723 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 230,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649230 SAMN40239877 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 35.34 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 69,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649231 SAMN40239916 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .671 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 17,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649232 SAMN40239917 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.21 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,100 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649233 SAMN40239918 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.868 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649234 SAMN40239914 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.61 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649235 SAMN40239915 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.199 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649236 SAMN40239913 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-21 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 20.5 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240121 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 34,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649237 SAMN40239919 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-24 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.47 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240124 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649238 SAMN40239920 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649239 SAMN40239921 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.631 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649240 SAMN40239922 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.86 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 1,900 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649241 SAMN40240059 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.06 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649242 SAMN40239878 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.523 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649243 SAMN40240058 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-23 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.06 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240123 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 26,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649244 SAMN40239923 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649245 SAMN40240060 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.666496 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 18,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649246 SAMN40240062 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.31 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,300 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649247 SAMN40240064 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.3 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 36,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649248 SAMN40240063 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0834 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 30,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649249 SAMN40240061 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-22 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.18 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240122 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649250 SAMN40239892 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649251 SAMN40240065 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.732 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649252 SAMN40240066 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.714 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,100 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649253 SAMN40240067 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 43,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649254 SAMN40240068 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.1162 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649255 SAMN40240072 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.31 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6,600 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649256 SAMN40239875 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-17 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.83 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240117 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 62,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649257 SAMN40239893 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.08 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 29,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649258 SAMN40240070 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.178 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649259 SAMN40240073 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.102 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 19,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649260 SAMN40240071 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.973 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 20,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649261 SAMN40240069 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.508 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 230,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649262 SAMN40240074 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.7 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 25,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649263 SAMN40240076 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.087 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649264 SAMN40240075 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-30 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.547 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240130 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,100 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649265 SAMN40240078 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.867 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649266 SAMN40240077 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649267 SAMN40239924 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-28 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 17.3 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240128 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649268 SAMN40239928 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 35.46 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 52,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649269 SAMN40239925 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.14 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 13,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649270 SAMN40239926 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649271 SAMN40239927 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-28 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.492 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240128 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 73,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649272 SAMN40239929 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.686 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 21,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649273 SAMN40239931 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.875 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649274 SAMN40239879 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.919204 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 30,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649275 SAMN40239933 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.6097 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 38,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649276 SAMN40239930 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-25 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.75 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240125 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649277 SAMN40239932 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.3 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 25,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649278 SAMN40239934 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.733 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 600,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649279 SAMN40239936 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-28 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.53 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240128 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649280 SAMN40239937 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.662 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 21,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649281 SAMN40239935 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649282 SAMN40239940 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649283 SAMN40239938 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.43 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6,500 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649284 SAMN40239941 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.344 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 18,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649285 SAMN40239939 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.92 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 24,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649286 SAMN40239942 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.37 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 77,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649287 SAMN40239880 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-18 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.514 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240118 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 25,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649288 SAMN40239943 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.304 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 74,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649289 SAMN40239945 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.91351 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 17,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20649290 SAMN40239944 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-29 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.938 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240129 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 63,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance