SRX23949253 Lluteus_leaf SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750941 Lluteus_leaf Lluteus_leaf RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949254 R1195CT_rep1 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750943 R1195CT_rep1 R1195CT_rep1 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949255 R598CT_rep5 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750940 R598CT_rep5 R598CT_rep5 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949256 R198CT_rep1 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750945 R198CT_rep1 R198CT_rep1 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949257 R2195CT_rep2 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750942 R2195CT_rep2 R2195CT_rep2 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949258 R298CT_rep2 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750944 R298CT_rep2 R298CT_rep2 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949259 R3195CT_rep3 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750946 R3195CT_rep3 R3195CT_rep3 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949260 R398CT_rep3 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750947 R398CT_rep3 R398CT_rep3 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949261 R4195CT_rep4 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750948 R4195CT_rep4 R4195CT_rep4 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949262 R498CT_rep4 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750949 R498CT_rep4 R498CT_rep4 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000 SRX23949263 R5195CT_rep5 SRP495211 bp0 RNA data were extracted separately, from three different tissues (leaf, hypocotyl, and cotyledon). According to the manufacturer's instructions, RNA extraction was performed separately with a Quick-RNA plant/seed kit (Zymo Research) from ~150 mg of fresh hypocotyl and cotyledon, and ~60 mg of young leaves. Then, the tissues were frozen with liquid nitrogen and powdered by grinding them in mortar. In addition, a 30 min DNAse digestion was performed. RNA concentration and A260/A280 were measured by absorbance in Synergy HTX multi-plate reader (Biotek). The integrity of RNA assessment was performed through 2% agarose gel electrophoresis run at 100V for 1 hour. PE150 sequencing was performed in the Illumina Novaseq 6000 platform SRS20750950 R5195CT_rep5 R5195CT_rep5 RNA-Seq TRANSCRIPTOMIC size fractionation Illumina NovaSeq 6000