SRX700307 GSM1503669 SRP047079 SRS700492 GSM1503669 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503669 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503669 gds 301503669 GEO Accession GSM1503669 SRX700308 GSM1503670 SRP047079 SRS700494 GSM1503670 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503670 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503670 gds 301503670 GEO Accession GSM1503670 SRX700309 GSM1503671 SRP047079 SRS700493 GSM1503671 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503671 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503671 gds 301503671 GEO Accession GSM1503671 SRX700310 GSM1503672 SRP047079 SRS700495 GSM1503672 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503672 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503672 gds 301503672 GEO Accession GSM1503672 SRX700311 GSM1503673 SRP047079 SRS700496 GSM1503673 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503673 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503673 gds 301503673 GEO Accession GSM1503673 SRX700312 GSM1503674 SRP047079 SRS700497 GSM1503674 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503674 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503674 gds 301503674 GEO Accession GSM1503674 SRX700313 GSM1503675 SRP047079 SRS700498 GSM1503675 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503675 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503675 gds 301503675 GEO Accession GSM1503675 SRX700314 GSM1503676 SRP047079 SRS700499 GSM1503676 RNA-Seq TRANSCRIPTOMIC cDNA Retinae were dissected from p11 knockout or wild-type littermate controls. Both retinae from each animal were pooled for each sample. RNA was extracted using trizol and Qiagen Rneasy purification with on-column DNase digestion. Illumina library construction and sequencing was carried out as follows: total RNA was depleted of ribosomal RNA using the Ribozero rRNA removal kit (Epicentre), heat-fragmented to 200-700 bp in length and cloned using Uricil-N-Glycosylase-based strand-specific cloning. cDNA fragments were sequenced using an Illumina HiSeq 2000 Strand-specific, rRNA depleted total RNA, Paired (WT vs. Mef2d KO) or single-end (WT vs. Crx KO) 49 bp sequencing Illumina HiSeq 2000 GEO Sample GSM1503676 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1503676 gds 301503676 GEO Accession GSM1503676