SRX763350 Bisulfite normal SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. DNA was extracted from 1 g of in vitro materials using the Plant Genomic DNA MiniKit (Maestrogen) following the manufacturer’s instructions. Bisulfite treatment was applied at and by the sequencing center. SRS747846 Bisulfite Normal White Light Bisulfite-Seq GENOMIC unspecified 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX763353 mRNA normal SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. RNA was extracted from 1 g of in vitro materials using RNeasy Plant MiniKit following the protocol prescribed by the manufacturer. SRS747846 mRNA Normal White Light RNA-Seq TRANSCRIPTOMIC PolyA 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX763379 Far-Red Light Day 2 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to far-red light for 2 days. DNA was extracted from 1 g of in vitro materials using the Plant Genomic DNA MiniKit (Maestrogen) following the manufacturer’s instructions. Bisulfite treatment was applied at and by the sequencing center. SRS747867 Bisulfite Far-Red Light Day 2 Bisulfite-Seq GENOMIC unspecified 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX763422 mRNA Far-Red Light Day 2 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to far-red light for 2 days. RNA was extracted from 1 g of in vitro materials using RNeasy Plant MiniKit following the protocol prescribed by the manufacturer. SRS747867 mRNA Far-Red Light Day 2 RNA-Seq TRANSCRIPTOMIC PolyA 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX764349 Bisulfite Red Light Day 2 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to red light for 2 days. DNA was extracted from 1 g of in vitro materials using the Plant Genomic DNA MiniKit (Maestrogen) following the manufacturer’s instructions. Bisulfite treatment was applied at and by the sequencing center. SRS748714 SAMN03200198 Bisulfite Red Light Day 2 Bisulfite-Seq GENOMIC unspecified 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX764375 mRNA Red Light Day 2 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to red light for 2 days. RNA was extracted from 1 g of in vitro materials using RNeasy Plant MiniKit following the protocol prescribed by the manufacturer. SRS748714 SAMN03200198 mRNA Red Light Day 2 RNA-Seq TRANSCRIPTOMIC PolyA 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX765354 mRNA Far-Red Light Day 1 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to far-red light for 1 day. RNA was extracted from 1 g of in vitro materials using RNeasy Plant MiniKit following the protocol prescribed by the manufacturer. SRS749654 SAMN03200194 mRNA Far-Red Light Day 1 RNA-Seq TRANSCRIPTOMIC PolyA 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX765356 mRNA Far-Red Light Day 5 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to far-red light for 5 days. RNA was extracted from 1 g of in vitro materials using RNeasy Plant MiniKit following the protocol prescribed by the manufacturer. SRS749656 SAMN03200196 mRNA Far-Red Light Day 5 RNA-Seq TRANSCRIPTOMIC PolyA 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX766146 mRNA Red Light Day 1 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to red light for 1 day. RNA was extracted from 1 g of in vitro materials using RNeasy Plant MiniKit following the protocol prescribed by the manufacturer. SRS750326 SAMN03200197 mRNA Red Light Day 1 RNA-Seq TRANSCRIPTOMIC PolyA 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000 SRX766149 mRNA Red Light Day 5 SRP041869 All in vitro plant materials were grown under long-day conditions (16 h of light, 8 h of darkness) at C. Two month old in vitro materials were then exposed continuously to red light for 5 days. RNA was extracted from 1 g of in vitro materials using RNeasy Plant MiniKit following the protocol prescribed by the manufacturer. SRS750329 SAMN03200199 mRNA Red Light Day 5 RNA-Seq TRANSCRIPTOMIC PolyA 180 0 Application Read Forward 1 1 Application Read Reverse 91 Illumina HiSeq 2000