SRX803939 hsa_rna_seq_rep_1_raw SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_rna_seq_rep_1_raw RNA-Seq TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803940 hsa_rna_seq_rep_2_raw SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_rna_seq_rep_2_raw RNA-Seq TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803941 hsa_3_end_seq_rep_1_raw SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_3_end_seq_rep_1_raw AMPLICON TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 SRX803942 hsa_3_end_seq_rep_2_raw SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_3_end_seq_rep_2_raw AMPLICON TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 SRX803943 mmu_rna_seq_rep_1_raw SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_rna_seq_rep_1_raw RNA-Seq TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803944 mmu_rna_seq_rep_2_raw SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_rna_seq_rep_2_raw RNA-Seq TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803945 mmu_3_end_seq_rep_1_raw SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_3_end_seq_rep_1_raw AMPLICON TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 SRX803946 mmu_3_end_seq_rep_2_raw SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_3_end_seq_rep_2_raw AMPLICON TRANSCRIPTOMIC RANDOM 51 0 Application Read Forward 1 Illumina HiSeq 2000 SRX803947 sim_all_synthetic SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666)." SRS785865 SAMN03253216 sim_all_synthetic OTHER OTHER other 100 0 Application Read Forward 1 1 Application Read Reverse 51 unspecified SRX803948 sim_100_mio_synthetic SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 100,001,950 reads were randomly selected in a single sampling round." SRS785865 SAMN03253216 sim_100_mio_synthetic OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803949 sim_30_mio_synthetic SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 30,004,152 reads were randomly selected in two serial sampling rounds." SRS785865 SAMN03253216 sim_30_mio_synthetic OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803950 sim_10_mio_synthetic SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 10,000,760 reads were randomly selected in three serial sampling rounds." SRS785865 SAMN03253216 sim_10_mio_synthetic OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803951 sim_3_mio_synthetic SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 2,998,971 reads were randomly selected in four serial sampling rounds." SRS785865 SAMN03253216 sim_3_mio_synthetic OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803952 sim_1_mio_synthetic SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 999,436 reads were randomly selected in five serial sampling rounds." SRS785865 SAMN03253216 sim_1_mio_synthetic OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803953 hsa_rna_seq_rep_1_GENOMIC SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_rna_seq_rep_1_GENOMIC RNA-Seq GENOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803954 hsa_rna_seq_rep_1_TRANSCRIPTOMIC SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_rna_seq_rep_1_TRANSCRIPTOMIC RNA-Seq TRANSCRIPTOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803955 hsa_rna_seq_rep_2_GENOMIC SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_rna_seq_rep_2_GENOMIC RNA-Seq GENOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803956 hsa_rna_seq_rep_2_TRANSCRIPTOMIC SRP051039 PRJNA269376 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785863 SAMN03253219 hsa_rna_seq_rep_2_TRANSCRIPTOMIC RNA-Seq TRANSCRIPTOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803957 mmu_rna_seq_rep_1_GENOMIC SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_rna_seq_rep_1_GENOMIC RNA-Seq GENOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803958 mmu_rna_seq_rep_1_TRANSCRIPTOMIC SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_rna_seq_rep_1_TRANSCRIPTOMIC RNA-Seq TRANSCRIPTOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803959 mmu_rna_seq_rep_2_GENOMIC SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_rna_seq_rep_2_GENOMIC RNA-Seq GENOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803960 mmu_rna_seq_rep_2_TRANSCRIPTOMIC SRP051039 "Cells were cultured in RPMI medium (Sigma) at 37 degrees C and 5% CO2 and collected at approximately 70% confluency after trypsinization. Directional RNA-seq libraries were prepared according to the Illumina-provided protocol. Poly(A)-containing RNA was isolated from the cells with the ""Dynabeads mRNA DIRECT Kit"" (Ambion) and fragmented by alkaline hydrolysis to fragment sizes of 150-300 nt." SRS785864 SAMN03253218 mmu_rna_seq_rep_2_TRANSCRIPTOMIC RNA-Seq TRANSCRIPTOMIC RANDOM 50 0 Application Read Forward 1 Illumina HiSeq 2000 alignment_software segemehl 0.1.7-407 SRX803961 sim_100_mio_gen SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 100,001,950 reads were randomly selected in a single sampling round." SRS785865 SAMN03253216 sim_100_mio_gen OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803962 sim_30_mio_gen SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 30,004,152 reads were randomly selected in two serial sampling rounds." SRS785865 SAMN03253216 sim_30_mio_gen OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803963 sim_10_mio_gen SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 10,000,760 reads were randomly selected in three serial sampling rounds." SRS785865 SAMN03253216 sim_10_mio_gen OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803964 sim_3_mio_gen SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 2,998,971 reads were randomly selected in four serial sampling rounds." SRS785865 SAMN03253216 sim_3_mio_gen OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803965 sim_1_mio_gen SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 999,436 reads were randomly selected in five serial sampling rounds." SRS785865 SAMN03253216 sim_1_mio_gen OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803966 sim_100_mio_trx SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 100,001,950 reads were randomly selected in a single sampling round." SRS785865 SAMN03253216 sim_100_mio_trx OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803967 sim_30_mio_trx SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 30,004,152 reads were randomly selected in two serial sampling rounds." SRS785865 SAMN03253216 sim_30_mio_trx OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803968 sim_10_mio_trx SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 10,000,760 reads were randomly selected in three serial sampling rounds." SRS785865 SAMN03253216 sim_10_mio_trx OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803969 sim_3_mio_trx SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 2,998,971 reads were randomly selected in four serial sampling rounds." SRS785865 SAMN03253216 sim_3_mio_trx OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407 SRX803970 sim_1_mio_trx SRP051039 "Based on GENCODE v19 annotations, 692,414,670 paired-end reads were generated in silico from the human genome (hg19) with Flux Simulator (Griebel et al., Nucleic Acids Research 2012, 40(20):10073-83; doi: 10.1093/nar/gks666). From each read pair, only the mate in the sense direction was kept. Identifiers of remaining reads were simplified, sequences capitalized and poly(A) tails trimmed before 999,436 reads were randomly selected in five serial sampling rounds." SRS785865 SAMN03253216 sim_1_mio_trx OTHER OTHER other 50 0 Application Read Forward 1 unspecified alignment_software segemehl 0.1.7-407