<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Phel_sswd_exposure" center_name="University of Washington" accession="SRX807439">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX807439</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Washington">Phel_sswd_exposure</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Pycnopodia helianthoides sea star wasting disease exposure experiment- Treated FHL</TITLE>
    <STUDY_REF accession="SRP051104">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP051104</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Pycnopodia helianthoides (radius 160.5 +/- 30.9 mm) were collected from four sites in Washington State: Langley (LA) (48.038, -122.404); Dabob Bay (DB) (47.813, -122.820); Port Hadlock Marina (PH) (48.030, -122.745); Friday Harbor (FH) (48.545, -123.012). Sites had no reports of SSWD infection at time of collection. Individuals were inoculated with tissue homogenate prepared from the tube feet, dermal tissue, and coelomic fluid of three P. helianthoides with clinical signs of SSWD. The tissue was ground with a mortar and pestle, then placed in a Stomacher with 10 mL seawater, and centrifuged at 1000 x g for 5 min at 4°C. Organisms injected with the heat-killed homogenate comprised the control group. The treated group were injected with viral-sized fraction homogenate that was syringe-filtered through a 0.22 µm polyethylsulfone filter. Libraries were prepared using the Illumina TruSeq RNA Sample Preparation kit according to the manufacturer’s protocol</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS789009">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS789009</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03263886</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="50"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Treated_PH" center_name="University of Washington" accession="SRX894055">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX894055</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Washington">Treated_PH</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Pycnopodia helianthoides sea star wasting disease exposure experiment- Treated PH</TITLE>
    <STUDY_REF accession="SRP051104">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP051104</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Pycnopodia helianthoides (radius 160.5 +/- 30.9 mm) were collected from four sites in Washington State: Langley (LA) (48.038, -122.404); Dabob Bay (DB) (47.813, -122.820); Port Hadlock Marina (PH) (48.030, -122.745); Friday Harbor (FH) (48.545, -123.012). Sites had no reports of SSWD infection at time of collection. Individuals were inoculated with tissue homogenate prepared from the tube feet, dermal tissue, and coelomic fluid of three P. helianthoides with clinical signs of SSWD. The tissue was ground with a mortar and pestle, then placed in a Stomacher with 10 mL seawater, and centrifuged at 1000 x g for 5 min at 4°C. Organisms injected with the heat-killed homogenate comprised the control group. The treated group were injected with viral-sized fraction homogenate that was syringe-filtered through a 0.22 µm polyethylsulfone filter. Libraries were prepared using the Illumina TruSeq RNA Sample Preparation kit according to the manufacturer’s protocol</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS860070">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS860070</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03263887</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="50"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Treated_L" center_name="University of Washington" accession="SRX894056">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX894056</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Washington">Treated_L</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Pycnopodia helianthoides sea star wasting disease exposure experiment- Treated L</TITLE>
    <STUDY_REF accession="SRP051104">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP051104</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Pycnopodia helianthoides (radius 160.5 +/- 30.9 mm) were collected from four sites in Washington State: Langley (LA) (48.038, -122.404); Dabob Bay (DB) (47.813, -122.820); Port Hadlock Marina (PH) (48.030, -122.745); Friday Harbor (FH) (48.545, -123.012). Sites had no reports of SSWD infection at time of collection. Individuals were inoculated with tissue homogenate prepared from the tube feet, dermal tissue, and coelomic fluid of three P. helianthoides with clinical signs of SSWD. The tissue was ground with a mortar and pestle, then placed in a Stomacher with 10 mL seawater, and centrifuged at 1000 x g for 5 min at 4°C. Organisms injected with the heat-killed homogenate comprised the control group. The treated group were injected with viral-sized fraction homogenate that was syringe-filtered through a 0.22 µm polyethylsulfone filter. Libraries were prepared using the Illumina TruSeq RNA Sample Preparation kit according to the manufacturer’s protocol</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS860069">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS860069</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03263888</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="50"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Control_PH" center_name="University of Washington" accession="SRX894057">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX894057</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Washington">Control_PH</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Pycnopodia helianthoides sea star wasting disease exposure experiment- Control PH</TITLE>
    <STUDY_REF accession="SRP051104">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP051104</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Pycnopodia helianthoides (radius 160.5 +/- 30.9 mm) were collected from four sites in Washington State: Langley (LA) (48.038, -122.404); Dabob Bay (DB) (47.813, -122.820); Port Hadlock Marina (PH) (48.030, -122.745); Friday Harbor (FH) (48.545, -123.012). Sites had no reports of SSWD infection at time of collection. Individuals were inoculated with tissue homogenate prepared from the tube feet, dermal tissue, and coelomic fluid of three P. helianthoides with clinical signs of SSWD. The tissue was ground with a mortar and pestle, then placed in a Stomacher with 10 mL seawater, and centrifuged at 1000 x g for 5 min at 4°C. Organisms injected with the heat-killed homogenate comprised the control group. The treated group were injected with viral-sized fraction homogenate that was syringe-filtered through a 0.22 µm polyethylsulfone filter. Libraries were prepared using the Illumina TruSeq RNA Sample Preparation kit according to the manufacturer’s protocol</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS860068">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS860068</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03263889</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="50"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Control_DB" center_name="University of Washington" accession="SRX894058">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX894058</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Washington">Control_DB</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Pycnopodia helianthoides sea star wasting disease exposure experiment- Control DB</TITLE>
    <STUDY_REF accession="SRP051104">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP051104</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Pycnopodia helianthoides (radius 160.5 +/- 30.9 mm) were collected from four sites in Washington State: Langley (LA) (48.038, -122.404); Dabob Bay (DB) (47.813, -122.820); Port Hadlock Marina (PH) (48.030, -122.745); Friday Harbor (FH) (48.545, -123.012). Sites had no reports of SSWD infection at time of collection. Individuals were inoculated with tissue homogenate prepared from the tube feet, dermal tissue, and coelomic fluid of three P. helianthoides with clinical signs of SSWD. The tissue was ground with a mortar and pestle, then placed in a Stomacher with 10 mL seawater, and centrifuged at 1000 x g for 5 min at 4°C. Organisms injected with the heat-killed homogenate comprised the control group. The treated group were injected with viral-sized fraction homogenate that was syringe-filtered through a 0.22 µm polyethylsulfone filter. Libraries were prepared using the Illumina TruSeq RNA Sample Preparation kit according to the manufacturer’s protocol</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS860067">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS860067</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03263890</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="50"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Control_FHL" center_name="University of Washington" accession="SRX894059">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX894059</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Washington">Control_FHL</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Pycnopodia helianthoides sea star wasting disease exposure experiment- CControl FHL</TITLE>
    <STUDY_REF accession="SRP051104">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP051104</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Pycnopodia helianthoides (radius 160.5 +/- 30.9 mm) were collected from four sites in Washington State: Langley (LA) (48.038, -122.404); Dabob Bay (DB) (47.813, -122.820); Port Hadlock Marina (PH) (48.030, -122.745); Friday Harbor (FH) (48.545, -123.012). Sites had no reports of SSWD infection at time of collection. Individuals were inoculated with tissue homogenate prepared from the tube feet, dermal tissue, and coelomic fluid of three P. helianthoides with clinical signs of SSWD. The tissue was ground with a mortar and pestle, then placed in a Stomacher with 10 mL seawater, and centrifuged at 1000 x g for 5 min at 4°C. Organisms injected with the heat-killed homogenate comprised the control group. The treated group were injected with viral-sized fraction homogenate that was syringe-filtered through a 0.22 µm polyethylsulfone filter. Libraries were prepared using the Illumina TruSeq RNA Sample Preparation kit according to the manufacturer’s protocol</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS860066">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS860066</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03263891</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="50"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
