<?xml version="1.0" encoding="UTF-8"?>
<RUN_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <RUN run_center="BI" run_date="2013-12-13T05:00:00Z" accession="SRR1755789" center_name="BI" alias="H7A7UADXX131213.1.tagged_509.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1755789</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">H7A7UADXX131213.1.tagged_509.bam</SUBMITTER_ID>
      <UUID>aee1cb86-b568-417e-8dca-8c520a627d00</UUID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX840902">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BI">2913331.WR39145.Solexa-205932.H7A7UADXX131213.P</SUBMITTER_ID>
        <UUID>bec653c3-874c-4bc8-aa26-d4594b784cb3</UUID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-12-14 12:07:11.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.20</VERSION>
          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>RNA</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>flowcell_barcode</TAG>
        <VALUE>H7A7UADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>448003.0</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>instrument_name</TAG>
        <VALUE>SL-HDB</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lane</TAG>
        <VALUE>1</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunStrandAgnostic</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>molecular_indexing_scheme</TAG>
        <VALUE>tagged_509 [CTATGCGT]</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-2348</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-RNA-0001</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G50968</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_id</TAG>
        <VALUE>H7A7U.1</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_platform_unit</TAG>
        <VALUE>H7A7UADXX131213.1.CTATGCGT</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-510</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-49JMQ</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_barcode</TAG>
        <VALUE>H7A7UADXX131213</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_name</TAG>
        <VALUE>131213_SL-HDB_0414_AFCH7A7UADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>39145</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN run_center="BI" run_date="2013-12-13T05:00:00Z" accession="SRR1755913" center_name="BI" alias="H7A2CADXX131213.1.tagged_509.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1755913</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">H7A2CADXX131213.1.tagged_509.bam</SUBMITTER_ID>
      <UUID>3ff47466-644b-4286-80d4-afe2743fa192</UUID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX840981">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BI">2913331.WR39145.Solexa-205932.H7A2CADXX131213.P</SUBMITTER_ID>
        <UUID>c0877fef-ddbd-457a-aa06-fd8108df2b7d</UUID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-12-14 12:07:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.21.3</VERSION>
          <NOTES>Sequencer Application 2.0.12.0</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>RNA</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>flowcell_barcode</TAG>
        <VALUE>H7A2CADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>448003.0</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>instrument_name</TAG>
        <VALUE>SL-HDD</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lane</TAG>
        <VALUE>1</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunStrandAgnostic</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>molecular_indexing_scheme</TAG>
        <VALUE>tagged_509 [CTATGCGT]</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-2348</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-RNA-0001</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G50968</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_id</TAG>
        <VALUE>H7A2C.1</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_platform_unit</TAG>
        <VALUE>H7A2CADXX131213.1.CTATGCGT</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-510</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-49JMQ</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_barcode</TAG>
        <VALUE>H7A2CADXX131213</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_name</TAG>
        <VALUE>131213_SL-HDD_0298_AFCH7A2CADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>39145</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN run_center="BI" run_date="2013-12-13T05:00:00Z" accession="SRR1756048" center_name="BI" alias="H7A1YADXX131213.1.tagged_509.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1756048</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">H7A1YADXX131213.1.tagged_509.bam</SUBMITTER_ID>
      <UUID>fe1d6d83-b671-47a8-ad73-14ecbf8709b3</UUID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX841072">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BI">2913331.WR39145.Solexa-205932.H7A1YADXX131213.P</SUBMITTER_ID>
        <UUID>eb7c1aa2-a6b0-4e6b-b4ef-b274d3ddfb57</UUID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-12-14 12:06:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.21.3</VERSION>
          <NOTES>Sequencer Application 2.0.12.0</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>RNA</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>flowcell_barcode</TAG>
        <VALUE>H7A1YADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>448003.0</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>instrument_name</TAG>
        <VALUE>SL-HDD</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lane</TAG>
        <VALUE>1</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunStrandAgnostic</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>molecular_indexing_scheme</TAG>
        <VALUE>tagged_509 [CTATGCGT]</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-2348</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-RNA-0001</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G50968</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_id</TAG>
        <VALUE>H7A1Y.1</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_platform_unit</TAG>
        <VALUE>H7A1YADXX131213.1.CTATGCGT</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-510</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-49JMQ</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_barcode</TAG>
        <VALUE>H7A1YADXX131213</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_name</TAG>
        <VALUE>131213_SL-HDD_0299_BFCH7A1YADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>39145</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN run_center="BI" run_date="2013-12-15T05:00:00Z" accession="SRR1756309" center_name="BI" alias="H7A21ADXX131215.2.tagged_509.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1756309</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">H7A21ADXX131215.2.tagged_509.bam</SUBMITTER_ID>
      <UUID>d93d45e9-5f1f-4ac4-b7a9-fe5f9af7ef03</UUID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX841276">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BI">2913331.WR39145.Solexa-205932.H7A21ADXX131215.P</SUBMITTER_ID>
        <UUID>7e2d8133-5cd5-4d51-b3ae-f033b62f13ed</UUID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-12-16 07:45:33.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.21.3</VERSION>
          <NOTES>Sequencer Application 2.0.12.0</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>RNA</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>flowcell_barcode</TAG>
        <VALUE>H7A21ADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>448003.0</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>instrument_name</TAG>
        <VALUE>SL-HBV</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lane</TAG>
        <VALUE>2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunStrandAgnostic</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>molecular_indexing_scheme</TAG>
        <VALUE>tagged_509 [CTATGCGT]</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-2348</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-RNA-0001</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G50968</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_id</TAG>
        <VALUE>H7A21.2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_platform_unit</TAG>
        <VALUE>H7A21ADXX131215.2.CTATGCGT</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-510</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-49JMQ</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_barcode</TAG>
        <VALUE>H7A21ADXX131215</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_name</TAG>
        <VALUE>131215_SL-HBV_0277_AFCH7A21ADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>39145</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN run_center="BI" run_date="2013-12-13T05:00:00Z" accession="SRR1765128" center_name="BI" alias="H7A1YADXX131213.2.tagged_509.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1765128</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">H7A1YADXX131213.2.tagged_509.bam</SUBMITTER_ID>
      <UUID>3266b41f-6613-4d1a-8598-530b6b07bc58</UUID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX841072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX841072</PRIMARY_ID>
        <SUBMITTER_ID namespace="BI">2913331.WR39145.Solexa-205932.H7A1YADXX131213.P</SUBMITTER_ID>
        <UUID>eb7c1aa2-a6b0-4e6b-b4ef-b274d3ddfb57</UUID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-12-14 12:06:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.21.3</VERSION>
          <NOTES>Sequencer Application 2.0.12.0</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>RNA</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>flowcell_barcode</TAG>
        <VALUE>H7A1YADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>448003.0</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>instrument_name</TAG>
        <VALUE>SL-HDD</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lane</TAG>
        <VALUE>2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunStrandAgnostic</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>molecular_indexing_scheme</TAG>
        <VALUE>tagged_509 [CTATGCGT]</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-2348</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-RNA-0001</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G50968</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_id</TAG>
        <VALUE>H7A1Y.2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_platform_unit</TAG>
        <VALUE>H7A1YADXX131213.2.CTATGCGT</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-510</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-49JMQ</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_barcode</TAG>
        <VALUE>H7A1YADXX131213</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_name</TAG>
        <VALUE>131213_SL-HDD_0299_BFCH7A1YADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>39145</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN run_center="BI" run_date="2013-12-13T05:00:00Z" accession="SRR1765136" center_name="BI" alias="H7A7UADXX131213.2.tagged_509.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1765136</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">H7A7UADXX131213.2.tagged_509.bam</SUBMITTER_ID>
      <UUID>bf539801-0c31-434e-ad4c-c9f64f8204b9</UUID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX840902">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX840902</PRIMARY_ID>
        <SUBMITTER_ID namespace="BI">2913331.WR39145.Solexa-205932.H7A7UADXX131213.P</SUBMITTER_ID>
        <UUID>bec653c3-874c-4bc8-aa26-d4594b784cb3</UUID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-12-14 12:07:11.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.20</VERSION>
          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>RNA</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>flowcell_barcode</TAG>
        <VALUE>H7A7UADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>448003.0</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>instrument_name</TAG>
        <VALUE>SL-HDB</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lane</TAG>
        <VALUE>2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunStrandAgnostic</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>molecular_indexing_scheme</TAG>
        <VALUE>tagged_509 [CTATGCGT]</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-2348</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-RNA-0001</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G50968</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_id</TAG>
        <VALUE>H7A7U.2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_platform_unit</TAG>
        <VALUE>H7A7UADXX131213.2.CTATGCGT</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-510</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-49JMQ</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_barcode</TAG>
        <VALUE>H7A7UADXX131213</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_name</TAG>
        <VALUE>131213_SL-HDB_0414_AFCH7A7UADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>39145</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN run_center="BI" run_date="2013-12-13T05:00:00Z" accession="SRR1765151" center_name="BI" alias="H7A2CADXX131213.2.tagged_509.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1765151</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">H7A2CADXX131213.2.tagged_509.bam</SUBMITTER_ID>
      <UUID>82cfbbc7-93be-4cdf-869d-4e35327fb62b</UUID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX840981">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX840981</PRIMARY_ID>
        <SUBMITTER_ID namespace="BI">2913331.WR39145.Solexa-205932.H7A2CADXX131213.P</SUBMITTER_ID>
        <UUID>c0877fef-ddbd-457a-aa06-fd8108df2b7d</UUID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-12-14 12:07:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.21.3</VERSION>
          <NOTES>Sequencer Application 2.0.12.0</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>RNA</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>flowcell_barcode</TAG>
        <VALUE>H7A2CADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>448003.0</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>instrument_name</TAG>
        <VALUE>SL-HDD</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lane</TAG>
        <VALUE>2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunStrandAgnostic</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>molecular_indexing_scheme</TAG>
        <VALUE>tagged_509 [CTATGCGT]</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-2348</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-RNA-0001</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G50968</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_id</TAG>
        <VALUE>H7A2C.2</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>read_group_platform_unit</TAG>
        <VALUE>H7A2CADXX131213.2.CTATGCGT</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-510</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-49JMQ</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_barcode</TAG>
        <VALUE>H7A2CADXX131213</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>run_name</TAG>
        <VALUE>131213_SL-HDD_0298_AFCH7A2CADXX</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-57M2A</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>39145</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
</RUN_SET>
