SRX841366 Stage1 SRP052210 PRJNA272559 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817731 SAMN03280996 WGS METAGENOMIC PCR 506 0 Application Read Forward 1 1 Application Read Reverse 254 Illumina MiSeq SRX841388 Stage2 SRP052210 PRJNA272559 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817759 SAMN03280997 WGS METAGENOMIC PCR 506 0 Application Read Forward 1 1 Application Read Reverse 254 Illumina MiSeq SRX841396 Stage3 SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817760 SAMN03280998 WGS METAGENOMIC PCR 506 0 Application Read Forward 1 1 Application Read Reverse 254 Illumina MiSeq SRX841403 Stage4 SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817761 SAMN03280999 WGS METAGENOMIC PCR 506 0 Application Read Forward 1 1 Application Read Reverse 254 Illumina MiSeq SRX841408 Stage5 SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817762 WGS METAGENOMIC PCR 506 0 Application Read Forward 1 1 Application Read Reverse 254 Illumina MiSeq SRX841409 Stage6 SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817763 WGS METAGENOMIC PCR 504 0 Application Read Forward 1 1 Application Read Reverse 253 Illumina MiSeq SRX841410 Stage7 SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817764 WGS METAGENOMIC PCR 504 0 Application Read Forward 1 1 Application Read Reverse 253 Illumina MiSeq SRX841433 Stage1-18S SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817731 WGS METAGENOMIC PCR 610 0 Application Read Forward 1 1 Application Read Reverse 306 Illumina MiSeq SRX841435 Stage2-18S SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817759 WGS METAGENOMIC PCR 580 0 Application Read Forward 1 1 Application Read Reverse 291 Illumina MiSeq SRX841436 Stage3-18S SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817760 WGS METAGENOMIC PCR 614 0 Application Read Forward 1 1 Application Read Reverse 308 Illumina MiSeq SRX841443 Stage4-18S SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817761 WGS METAGENOMIC PCR 614 0 Application Read Forward 1 1 Application Read Reverse 308 Illumina MiSeq SRX841444 Stage5-18S SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817762 WGS METAGENOMIC PCR 610 0 Application Read Forward 1 1 Application Read Reverse 306 Illumina MiSeq SRX841445 Stage6-18S SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817763 WGS METAGENOMIC PCR 612 0 Application Read Forward 1 1 Application Read Reverse 307 Illumina MiSeq SRX841449 Stage7-18S SRP052210 PCR was carried out using genomic DNA as template targeting the V4 region of 16S/18S rRNA genes, PCR products were purified with GeneJET Gel Extraction Kit (Thermo Scientific). Sequencing libraries were generated using NEB Next® UltraTM DNA Library Prep Kit for Illumina (NEB, USA) following manufacturer’s recommendations and index codes were added. The library quality was assessed on the Qubit@ 2.0 Fluorometer (Thermo Scientific) and Agilent Bioanalyzer 2100 system. Finally, the library was sequenced on an Illumina MiSeq platform using paired-end sequencing. SRS817764 WGS METAGENOMIC PCR 608 0 Application Read Forward 1 1 Application Read Reverse 305 Illumina MiSeq