SRX848889
BT325 bulk
Whole-genome sequencing of bulk DNA from frozen glioblastoma BT325
SRP052627
DNA is extracted from a pool of flow sorted glioblastoma nuclei and subjected to whole-genome sequencing.
SRS823750
BT325
WGS
GENOMIC
unspecified
202
0
Application Read
Forward
1
1
Application Read
Reverse
102
Illumina HiSeq 2000
bwa
0.6.1-r112-master
MarkDuplicates
1.473(1346)
SRX851083
BL325_CCGD
Whole-genome sequencing of bulk blood DNA of BT325 patient
SRP052627
SRS829893
WGS
GENOMIC
unspecified
202
0
Application Read
Forward
1
1
Application Read
Reverse
102
Illumina HiSeq 2000
bwa
0.6.1-r112-master
MarkDuplicates
1.474(1351)
SRX857666
BT325_WES_Tumor
Whole-exome sequencing of bulk DNA from frozen glioblastoma BT325
SRP052627
SRS823750
WXS
GENOMIC
Hybrid Selection
152
0
Application Read
Forward
1
1
Application Read
Reverse
77
Illumina HiSeq 2500
bwa -q5 -l 32 -k 2 -o 1
0.5.9-tpx
MarkDuplicates
1.464(1311)
GATK Table Recalibration
1.4-14-g3550ea7
GATK IndelRealigner
1.4-14-g3550ea7
SRX857684
BL325_WES_blood
Whole-exome sequencing of bulk blood DNA from patient BT325
SRP052627
SRS829893
WXS
GENOMIC
Hybrid Selection
152
0
Application Read
Forward
1
1
Application Read
Reverse
77
Illumina HiSeq 2500
bwa -q 5 -l 32 -k 2 -o 1
0.5.9-tpx
GATK TableRecalibration
1.4-14-g3550ea7
MarkDuplicates
1.464(1311)
GATK IndelRealigner
1.4-14-g3550ea7
SRX858332
BT325_single_cells_pool1
Whole-genome sequencing of whole-genome amplified DNA from 59 single nuclei from brain tumor patient BT325
SRP052627
DNA was isolated from flow-sorted single nuclei, subjected to whole-genome amplification by multiple-displacement amplification, and then made into standard illumina whole-genome libraries.
SRS823750
WGS
GENOMIC
unspecified
160
0
Application Read
Forward
1
1
Application Read
Reverse
81
Illumina HiSeq 2000
bwa
0.6.1-r112-master
MarkDuplicates
1.474(1351)
SRX858334
BT325_single_cells_pool2
Whole-genome sequencing of whole-genome amplified DNA from 40 single nuclei from brain tumor patient BT325
SRP052627
DNA was isolated from flow-sorted single nuclei, subjected to whole-genome amplification by multiple-displacement amplification, and then made into standard illumina whole-genome libraries.
SRS823750
WGS
GENOMIC
unspecified
202
0
Application Read
Forward
1
1
Application Read
Reverse
102
Illumina HiSeq 2500
bwa
0.6.1-r112-master
MarkDuplicates
1.474(1351)
SRX858848
BT325_single_selected
Whole-genome sequencing of whole-genome amplified DNA from 4 single nuclei from brain tumor patient BT325
SRP052627
SRS823750
WGS
GENOMIC
unspecified
202
0
Application Read
Forward
1
1
Application Read
Reverse
102
Illumina HiSeq 2500
bwa
0.5.9
GATK TableRecalibration
1.6-5-g557a77
MarkDuplicates
1.92(1464)
GATK IndelRealigner
1.6-5-g557da77