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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Sample P2F" accession="SRX856955" center_name="Albert Einstein College of Medicine">
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      <PRIMARY_ID>SRX856955</PRIMARY_ID>
      <SUBMITTER_ID namespace="Albert Einstein College of Medicine">Sample P2F</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sample P2F WGS</TITLE>
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        <PRIMARY_ID>SRP052905</PRIMARY_ID>
      </IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Genomic DNA was extracted from lymphoblastoid cell lines. Genomic DNA was fragmented and 500 bp fragments were size selected using gel electrophoresis. Adaptor sequences were the ligated. Sequencing was performed on the Illumina HiSeq 2000 platform to generate 90 bp paired-end reads. Reads were mapped to the human reference genome (hg19) using Burrows Wheeler Aligner (BWA) and duplicate reads were filtered using Picard.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS829024</PRIMARY_ID>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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      <PRIMARY_ID>SRX857040</PRIMARY_ID>
      <SUBMITTER_ID namespace="Albert Einstein College of Medicine">Sample P1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sample P1 WGS</TITLE>
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        <PRIMARY_ID>SRP052905</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Genomic DNA was extracted from lymphoblastoid cell lines. Genomic DNA was fragmented and 500 bp fragments were size selected using gel electrophoresis. Adaptor sequences were the ligated. Sequencing was performed on the Illumina HiSeq 2000 platform to generate 90 bp paired-end reads. Reads were mapped to the human reference genome (hg19) using Burrows Wheeler Aligner (BWA) and duplicate reads were filtered using Picard.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS829088</PRIMARY_ID>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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  <EXPERIMENT alias="Sample P1M" accession="SRX857041" center_name="Albert Einstein College of Medicine">
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      <PRIMARY_ID>SRX857041</PRIMARY_ID>
      <SUBMITTER_ID namespace="Albert Einstein College of Medicine">Sample P1M</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sample P1M WGS</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP052905</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Genomic DNA was extracted from lymphoblastoid cell lines. Genomic DNA was fragmented and 500 bp fragments were size selected using gel electrophoresis. Adaptor sequences were the ligated. Sequencing was performed on the Illumina HiSeq 2000 platform to generate 90 bp paired-end reads. Reads were mapped to the human reference genome (hg19) using Burrows Wheeler Aligner (BWA) and duplicate reads were filtered using Picard.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS829089</PRIMARY_ID>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
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        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>180</SPOT_LENGTH>
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            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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          <STEP_INDEX/>
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          <PROGRAM>BWA</PROGRAM>
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  </EXPERIMENT>
  <EXPERIMENT alias="P2M" accession="SRX857042" center_name="Albert Einstein College of Medicine">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX857042</PRIMARY_ID>
      <SUBMITTER_ID namespace="Albert Einstein College of Medicine">P2M</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sample P2M WGS</TITLE>
    <STUDY_REF accession="SRP052905">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052905</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Genomic DNA was extracted from lymphoblastoid cell lines. Genomic DNA was fragmented and 500 bp fragments were size selected using gel electrophoresis. Adaptor sequences were the ligated. Sequencing was performed on the Illumina HiSeq 2000 platform to generate 90 bp paired-end reads. Reads were mapped to the human reference genome (hg19) using Burrows Wheeler Aligner (BWA) and duplicate reads were filtered using Picard.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS829090</PRIMARY_ID>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
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            <READ_INDEX>1</READ_INDEX>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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    </PROCESSING>
  </EXPERIMENT>
  <EXPERIMENT alias="Sample P2" accession="SRX857043" center_name="Albert Einstein College of Medicine">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX857043</PRIMARY_ID>
      <SUBMITTER_ID namespace="Albert Einstein College of Medicine">Sample P2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sample P2 WGS</TITLE>
    <STUDY_REF accession="SRP052905">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052905</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Genomic DNA was extracted from lymphoblastoid cell lines. Genomic DNA was fragmented and 500 bp fragments were size selected using gel electrophoresis. Adaptor sequences were the ligated. Sequencing was performed on the Illumina HiSeq 2000 platform to generate 90 bp paired-end reads. Reads were mapped to the human reference genome (hg19) using Burrows Wheeler Aligner (BWA) and duplicate reads were filtered using Picard.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS829091">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS829091</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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          <SPOT_LENGTH>180</SPOT_LENGTH>
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            <READ_INDEX>1</READ_INDEX>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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  <EXPERIMENT alias="Sample P1F" accession="SRX857045" center_name="Albert Einstein College of Medicine">
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      <PRIMARY_ID>SRX857045</PRIMARY_ID>
      <SUBMITTER_ID namespace="Albert Einstein College of Medicine">Sample P1F</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sample P1F WGS</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP052905</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Genomic DNA was extracted from lymphoblastoid cell lines. Genomic DNA was fragmented and 500 bp fragments were size selected using gel electrophoresis. Adaptor sequences were the ligated. Sequencing was performed on the Illumina HiSeq 2000 platform to generate 90 bp paired-end reads. Reads were mapped to the human reference genome (hg19) using Burrows Wheeler Aligner (BWA) and duplicate reads were filtered using Picard.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS829093</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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