<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX862827" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-329">
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      <PRIMARY_ID>SRX862827</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-329</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample EDL933</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS833784</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292324</EXTERNAL_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-329</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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          <PAIRED/>
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          <SPOT_LENGTH>302</SPOT_LENGTH>
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            <READ_INDEX>0</READ_INDEX>
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            <BASE_COORD>1</BASE_COORD>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
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        </SPOT_DECODE_SPEC>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862828" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-325">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862828</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-325</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-1051</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833785">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833785</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292325</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-325</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
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            <READ_INDEX>0</READ_INDEX>
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            <BASE_COORD>1</BASE_COORD>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862829" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-323">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862829</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-323</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-1470</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833786">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833786</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292326</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-323</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862830" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-298">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862830</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-298</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-1547</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833787">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833787</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292327</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-298</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
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            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862831" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-326">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862831</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-326</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-1555</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833788">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833788</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292328</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-326</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862832" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-327">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862832</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-327</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Enterobacter cloacae: asymmetrical read lengths: Sample OLC-1682</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833789">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833789</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292329</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-327</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862833" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-328">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862833</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-328</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Enterobacter cloacae: asymmetrical read lengths: Sample OLC-1683</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833790">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833790</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292330</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-328</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862834" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-291">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862834</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-291</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-455</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833791">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833791</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292331</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-291</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862835" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-292">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862835</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-292</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-464</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833792">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833792</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292332</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-292</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862836" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-331">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862836</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-331</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-469</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833793">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833793</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292333</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-331</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>602</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862837" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-293">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862837</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-293</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-675</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833794">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833794</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292334</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-293</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862838" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-294">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862838</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-294</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-679</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833796">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833796</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292335</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-294</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862839" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-581">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862839</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-581</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-682</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833795">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833795</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292336</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-581</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862840" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-583">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862840</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-583</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-684</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833797">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833797</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292337</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-583</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862841" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-295">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862841</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-295</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-710</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833799">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833799</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292338</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-295</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862842" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-584">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862842</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-584</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-715</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833798">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833798</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292339</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-584</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862843" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-296">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862843</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-296</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-716</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833800">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833800</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292340</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-296</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862844" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-336">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862844</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-336</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-721</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833803">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833803</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292341</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-336</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>602</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862845" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-585">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862845</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-585</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-728</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833801">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833801</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292342</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-585</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862846" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-332">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862846</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-332</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-731</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS829155">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS829155</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292343</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-332</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>602</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862847" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-333">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862847</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-333</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-732</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833802">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833802</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292344</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-333</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>602</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862848" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-334">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862848</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-334</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-733</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833805">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833805</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292345</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-334</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>602</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862849" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-335">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862849</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-335</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-791</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833804">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833804</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292346</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-335</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>602</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862850" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-297">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862850</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-297</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-797</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833806">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833806</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292347</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-297</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862851" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-586">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862851</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-586</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-816</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833809">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833809</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292348</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-586</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862852" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-587">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862852</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-587</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-975</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833807">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833807</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292349</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-587</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862853" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-330">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862853</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-330</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample Sakai</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833808">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833808</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03292350</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-330</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX862854" center_name="Canadian Food Inspection Agency" alias="2014-SEQ-582">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX862854</PRIMARY_ID>
      <SUBMITTER_ID namespace="Canadian Food Inspection Agency">2014-SEQ-582</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Escherichia coli: asymmetrical read lengths: Sample OLC-683</TITLE>
    <STUDY_REF accession="SRP052916">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP052916</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA273275</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Isolates were cultured on nutrient agar (Difco, Becton, Dickinson &amp; Co) overnight (14-16 hrs) at 37 degree C, and genomic DNA was extracted from  single colonies using the Maxwell 16 Cell LEV DNA Purification kit (Promega, Madison, WI). DNA was quantified using the Quant-iT High-Sensitivity DNA Assay Kit (Life Technologies Inc., Burlington, ON). Sequencing libraries were constructed from 1 ng of gDNA using the Nextera XT DNA sample preparation kit (Illumina, Inc., San Diego, CA) and the Nextera XT index kit (Illumina, Inc.)."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS833810">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS833810</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03317014</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2014-SEQ-582</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>22</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>alignment_software</TAG>
        <VALUE>N/A</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
