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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="crispr3" accession="SRX950215" center_name="Whitehead Institute">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX950215</PRIMARY_ID>
      <SUBMITTER_ID namespace="Whitehead Institute">crispr3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Targeting rate at the locus Tsg101 in MelJuSo cells</TITLE>
    <STUDY_REF accession="SRP056022">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056022</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>MelJuSo cells were grown in RPMI supplemented with 10% heat-inactivated fetal bovine serum (IFS) at 37C and 5% CO2. Genomic DNA in the vicinity of the sgRNA target was amplifie by PCR. Cells were lysed at 55C for 2 hours using tail lysis buffer (1% SDS, 100 mM NaCl, 50mM Tris, and 1mM EDTA) containing proteinase K (Roche Diagnostics; #03115879001). Genomic DNA was purified from the lysates by isopropanol precipitation. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS872132">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS872132</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>300</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>151</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>25798939</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
</EXPERIMENT_SET>
