<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Penstemon-MSG1" accession="SRX957456" center_name="University of Kansas">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX957456</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Kansas">Penstemon-MSG1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Genotyping markers for Penstemon neomexicanus  x P. barbatus F2 hybrids</TITLE>
    <STUDY_REF accession="SRP060544">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP060544</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA289052</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiplexed shotgun genotyping (MSG, aka radseq) using the restriction enzyme AseI on Penstemon neomexicanus, P. barbatus, and 96 of their F2 hybrids, sequenced in a total of 2 Illumina Hi-Seq 2500 lanes.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS874778">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS874778</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>MSG</LIBRARY_NAME>
        <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Reduced Representation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>100</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>Stacks</PROGRAM>
          <VERSION>1.27</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
