<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="BnCon-24hrRep1" accession="SRX956927" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
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      <PRIMARY_ID>SRX956927</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnCon-24hrRep1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 24hr mock inoculated biological replicate 1 transcriptome clean reads</TITLE>
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        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days onle B. napus plant biosample 1 were mock inoculated with and taken as control.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS874450</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnCon-24hrRep1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
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            <READ_INDEX>1</READ_INDEX>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
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  <EXPERIMENT alias="BnCon-24hrRep2" accession="SRX956928" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956928</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnCon-24hrRep2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 24hr mock inoculated biological replicate 2 transcriptome clean reads</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days onle B. napus plant biosample 2 was mock inoculated with and taken as control.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS874451</PRIMARY_ID>
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        <LIBRARY_NAME>BnCon-24hrRep2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>200</SPOT_LENGTH>
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            <READ_INDEX>1</READ_INDEX>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
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  <EXPERIMENT alias="BnCon-24hrRep3" accession="SRX956929" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956929</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnCon-24hrRep3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 24hr mock inoculated biological replicate 3 transcriptome clean reads</TITLE>
    <STUDY_REF accession="SRP056176">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days onle B. napus plant biosample 3 were mock inoculated with and taken as control.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS874452</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417211</EXTERNAL_ID>
        </IDENTIFIERS>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnCon-24hrRep3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
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  <EXPERIMENT alias="BnCon-48hrRep1" accession="SRX956930" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956930</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnCon-48hrRep1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 48hr mock inoculated biological replicate 1 transcriptome clean reads</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological 1 was mock inoculated with water and taken as control after 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS874453">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS874453</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417212</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnCon-48hrRep1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>200</SPOT_LENGTH>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX956931</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnCon-48hrRep2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 48hr mock inoculated biological replicate 2 transcriptome clean reads</TITLE>
    <STUDY_REF accession="SRP056176">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological sample 2 was mock inoculated with water and taken as control after 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS874454</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417213</EXTERNAL_ID>
        </IDENTIFIERS>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnCon-48hrRep2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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          <SPOT_LENGTH>200</SPOT_LENGTH>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
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  <EXPERIMENT alias="BnCon-48hrRep3" accession="SRX956932" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956932</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnCon-48hrRep3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 48hr mock inoculated biological replicate 3 transcriptome clean reads</TITLE>
    <STUDY_REF accession="SRP056176">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological 3 was mock inoculated with water and taken as control after 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS874455</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnCon-48hrRep3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
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    <PROCESSING/>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX956933</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnSs-24hrRep1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 24hr post inoculation with Sclerotinia sclerotiorum biological replicate 1 transcriptome clean reads</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological sample 1 was inoculated with Sclerotinia sclerotiorum and leaf samples colected 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS874456</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417215</EXTERNAL_ID>
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        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX956934</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnSs-24hrRep2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 24hr post inoculation with Sclerotinia sclerotiorum biological replicate 2 transcriptome clean reads</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological sample 2 was inoculated with Sclerotinia sclerotiorum and leaf sample collected 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS874457</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417216</EXTERNAL_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnSs-24hrRep2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
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  <EXPERIMENT alias="BnSs-24hrRep3" accession="SRX956935" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956935</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnSs-24hrRep3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 24hr post inoculation with Sclerotinia sclerotiorum biological replicate 3 transcriptome clean reads</TITLE>
    <STUDY_REF accession="SRP056176">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological sample 3 was inoculated with Sclerotinia sclerotiorum and leaf samples were collected 24hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS874458">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS874458</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417217</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnSs-24hrRep3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>200</SPOT_LENGTH>
          <READ_SPEC>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="BnSs-48hrRep1" accession="SRX956936" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956936</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnSs-48hrRep1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 48hr post inoculation with Sclerotinia sclerotiorum biological replicate 1 transcriptome clean reads</TITLE>
    <STUDY_REF accession="SRP056176">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological sample 1 was inoculated with Sclerotinia sclerotiorum and leaf samples were collected 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS874459">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS874459</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417218</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnSs-48hrRep1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>200</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="BnSs-48hrRep2" accession="SRX956937" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956937</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnSs-48hrRep2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 48hr post inoculation with Sclerotinia sclerotiorum biological replicate 2 transcriptome clean reads</TITLE>
    <STUDY_REF accession="SRP056176">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA278304</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological sample 2 was inoculated with Sclerotinia sclerotiorum and leaf samples were collected 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS874461">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS874461</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03417219</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnSs-48hrRep2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>200</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="BnSs-48hrRep3" accession="SRX956938" center_name="Centre of Biotechnology, Siksha O Anusandhan Unive">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX956938</PRIMARY_ID>
      <SUBMITTER_ID namespace="Centre of Biotechnology, Siksha O Anusandhan Unive">BnSs-48hrRep3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brassica napus 48hr post inoculation with Sclerotinia sclerotiorum biological replicate 3 transcriptome clean reads</TITLE>
    <STUDY_REF accession="SRP056176">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP056176</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Leaf samples from 20 days old B. napus biological sample 3 was inoculated with Sclerotinia sclerotiorum and samples collected 48hr post inoculation.Total RNA was extracted using Trizol reagent (Invitrogen, USA)  and treated with DNase (Promega, Madison, WI)according to manufacturer’s protocol. The RNA-Seq sample preparation and library construction was done using the TruSeq stranded total RNA preparation kit with RiboZero plant (Illumina, San Diego CA) according to the manufacturer’s protocol.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS874460">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS874460</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BnSs-48hrRep3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="100" NOMINAL_SDEV="10"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>200</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
