<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Whole Genome Sequencing of Cdi2179 pass" accession="SRX1000524" center_name="University of Texas at Dallas">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1000524</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Texas at Dallas">Whole Genome Sequencing of Cdi2179 pass</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing of Cdi2179 pass</TITLE>
    <STUDY_REF accession="SRP057451">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP057451</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA281633</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina library preparation and sequencing was performed at the Tufts University DNA Core Facility. All gDNA samples were treated as low abundance samples, and libraries were prepared using the NuGen Ovation Ultralow DR Multiplex System 1-96 kit. The average library fragment size was ~390 bp, with high variability in fragment sizes due to low DNA inputs. Libraries were multiplexed and sequenced using the Illumina HiSeq 2500, yielding paired reads of 151 x 2 bases.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS914496">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS914496</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03492346</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>152</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
