<?xml version="1.0" encoding="UTF-8"?>
<RUN_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <RUN accession="SRR2042470" center_name="BCCAGSC" alias="A48373_2_lanes_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR2042470</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A48373_2_lanes_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX1040751">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A48373-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>250</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>126</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.18.64.0</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.18.64.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>149476,151333</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2015-01-26T19:18:01Z,2015-03-13T15:12:31Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
</RUN_SET>
