<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Sequencing of the Gambian pouched rat" accession="SRX1060095">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1060095</PRIMARY_ID>
      <SUBMITTER_ID namespace="NIEHS">Sequencing of the Gambian pouched rat</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sequencing of genomic DNA from Cricetomys gambianus (Gambian pouched rat)</TITLE>
    <STUDY_REF accession="SRP059556">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP059556</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The DNA was prepared using the TruSeq DNA PCR-Free Library Preparation Kit (Illumina), as recommended.  Note that DNA was sheared to an average size of 1.5 kb using a Covaris S220 focused-ultrasonicator with the following settings: 50 second treatment time, 175.0 watts peak power, 5% duty factor, and 200 cycles/burst.  The NextSeq 500, High Output, 300 cycle Kit was used to generate a total of 373,179,044 paired end reads from a single library.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS962468">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS962468</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="151" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>302</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>152</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
