SRX1044619 GSM1700885 SRP058910 PRJNA285458 SRS950032 SAMN03754009 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2000 gds 301700885 GSM1700885 GEO Accession GSM1700885 SRX1044620 GSM1700886 SRP058910 PRJNA285458 SRS950031 SAMN03754010 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2000 gds 301700886 GSM1700886 GEO Accession GSM1700886 SRX1044621 GSM1700887 SRP058910 PRJNA285458 SRS950030 SAMN03754011 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700887 GSM1700887 GEO Accession GSM1700887 SRX1044622 GSM1700888 SRP058910 PRJNA285458 SRS950029 SAMN03754012 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700888 GSM1700888 GEO Accession GSM1700888 SRX1044623 GSM1700889 SRP058910 PRJNA285458 SRS950028 SAMN03754013 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700889 GSM1700889 GEO Accession GSM1700889 SRX1044624 GSM1700890 SRP058910 PRJNA285458 SRS950027 SAMN03754014 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700890 GSM1700890 GEO Accession GSM1700890 SRX1044625 GSM1700891 SRP058910 PRJNA285458 SRS950026 SAMN03754015 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700891 GSM1700891 GEO Accession GSM1700891 SRX1044626 GSM1700892 SRP058910 PRJNA285458 SRS950025 SAMN03754016 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700892 GSM1700892 GEO Accession GSM1700892 SRX1044627 GSM1700893 SRP058910 PRJNA285458 SRS950024 SAMN03754017 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700893 GSM1700893 GEO Accession GSM1700893 SRX1044628 GSM1700894 SRP058910 PRJNA285458 SRS950023 SAMN03754018 RNA-Seq TRANSCRIPTOMIC cDNA Ribosome profiling lysates were clarified, RNase treated, and run over sucrose gradients to extract the monosome or disome peak. RNA was then extracted using SDS/hot phenol/chloroform and footprints of the specified size were retained by gel purification. Briefly, RNAs were ligated to a universal DNA linker followed by reverse transcription. cDNAs were then circularized and PCR amplified. Ribosome profiling circularized cDNA was subject to ribosomal RNA subtraction using custom biotinylated oligos in some cases. In others, Ribo-Zero was used. Illumina HiSeq 2500 gds 301700894 GSM1700894 GEO Accession GSM1700894