<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="P. lowii whole genome from opsin study" accession="SRX1309248">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1309248</PRIMARY_ID>
      <SUBMITTER_ID namespace="Washington University in St. Louis">P. lowii whole genome from opsin study</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Ptilocercus lowii raw sequence reads</TITLE>
    <STUDY_REF accession="SRP064536">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP064536</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Prepared with an Illumina sequencing library (Meyer and Kircher 2010), sheared using a Covaris S2, size-selected to ~350bp on a 1.6% agarose gel, and sequenced to low (~3-5x) coverage on a single lane of an Illumina HiSeq 2000 at the Penn State Genomics Core Facility.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1102463">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1102463</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
