<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="BioProject" alias="PRJNA234047" accession="SRP035283">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP035283</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA234047</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Clinical validation of next-generation sequencing approaches for pathogen diagnosis</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>The Chiu laboratory and UCSF-Abbott Viral Diagnostics and Discovery Center (VDDC) at University of California, San Francisco applies unbiased next-generation sequencing (NGS) approaches to identify known as well as novel pathogens in patient clinical samples with acute infections. Here we present clinical sample data used for validation and testing of NGS-based clinical assays for infectious disease diagnosis.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>Clinical validation of next-generation sequencing approaches for pathogen diagnosis</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <URL_LINK>
          <LABEL>UCSF-Abbott Viral Diagnostics and Discovery Center</LABEL>
          <URL>http://vddc.ucsf.edu/</URL>
        </URL_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
  <STUDY center_name="BioProject" alias="PRJNA298217" accession="SRP064607">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP064607</PRIMARY_ID>
      <SECONDARY_ID>SRX1315210</SECONDARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA298217</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Metagenomic Next-Generation Sequencing for Infectious Disease Diagnosis</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Metagenomics"/>
      <STUDY_ABSTRACT>This is a prospective study at UCSF using metagenomic next-generation sequencing and SURPI bioinformatics analysis to identify pathogens in clinical samples (cerebrospinal fluid, plasma, and bronchoalveolar fluid) for diagnosing infections in hospitalized patients</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>human metagenome</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_ATTRIBUTES>
      <STUDY_ATTRIBUTE>
        <TAG>parent_bioproject</TAG>
        <VALUE>PRJNA234047</VALUE>
      </STUDY_ATTRIBUTE>
    </STUDY_ATTRIBUTES>
  </STUDY>
</STUDY_SET>
