<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="CSN-iPS" accession="SRX1309514">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1309514</PRIMARY_ID>
      <SUBMITTER_ID namespace="Kaohsiung Medical University">CSN-iPS</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>CSN-iPS from human gastric tissue</TITLE>
    <STUDY_REF accession="SRP064548">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP064548</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA297074</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed by Welgene Biotech (Taipei, Taiwan). All procedures were carried out according to the manufacturer's protocol (IlluminaInc., San Diego, CA, USA). Sequencing libraries were prepared using TruSeq RNA Sample Prep kits and all libraries were sequenced on an Illumina GAIIx platform using the 50 bp single-end protocol. Each library was expected to generate 10 million reads. The sequence was directly determined using sequencing-by-synthesis technology with the TruSeq SBS Kit. Raw sequences were obtained using the Illumina GA Pipeline software CASAVA.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1102727">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1102727</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN04114977</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>CSN-iPS</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>50</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
