SRX1372108 GSM1917079 SRP065198 SRS1130719 GSM1917079 RNA-Seq TRANSCRIPTOMIC cDNA Cultures were pelleted and resuspended in cold Trizol before mechanical lysis using a bead beater followed by standard Trizol based extraction. Samples were treated with Turbo DNase (Ambion) and rRNA depleted using the Ribo-Zero™ Magnetic Kit for bacteria (Epicentre) Final RNA samples were submited to the UW-Madison Biotechnology Center DNA Sequencing Facility where libraries were constructed following a standard Illumina protocol with the TruSeq RNA Sample Preparation Kit Illumina HiSeq 2000 gds 301917079 GEO Accession GSM1917079 SRX1372109 GSM1917080 SRP065198 SRS1130718 GSM1917080 RNA-Seq TRANSCRIPTOMIC cDNA Cultures were pelleted and resuspended in cold Trizol before mechanical lysis using a bead beater followed by standard Trizol based extraction. Samples were treated with Turbo DNase (Ambion) and rRNA depleted using the Ribo-Zero™ Magnetic Kit for bacteria (Epicentre) Final RNA samples were submited to the UW-Madison Biotechnology Center DNA Sequencing Facility where libraries were constructed following a standard Illumina protocol with the TruSeq RNA Sample Preparation Kit Illumina HiSeq 2000 gds 301917080 GEO Accession GSM1917080 SRX1372110 GSM1917081 SRP065198 SRS1130717 GSM1917081 RNA-Seq TRANSCRIPTOMIC cDNA Cultures were pelleted and resuspended in cold Trizol before mechanical lysis using a bead beater followed by standard Trizol based extraction. Samples were treated with Turbo DNase (Ambion) and rRNA depleted using the Ribo-Zero™ Magnetic Kit for bacteria (Epicentre) Final RNA samples were submited to the UW-Madison Biotechnology Center DNA Sequencing Facility where libraries were constructed following a standard Illumina protocol with the TruSeq RNA Sample Preparation Kit Illumina HiSeq 2000 gds 301917081 GEO Accession GSM1917081 SRX1372111 GSM1917082 SRP065198 SRS1130716 GSM1917082 RNA-Seq TRANSCRIPTOMIC cDNA Cultures were pelleted and resuspended in cold Trizol before mechanical lysis using a bead beater followed by standard Trizol based extraction. Samples were treated with Turbo DNase (Ambion) and rRNA depleted using the Ribo-Zero™ Magnetic Kit for bacteria (Epicentre) Final RNA samples were submited to the UW-Madison Biotechnology Center DNA Sequencing Facility where libraries were constructed following a standard Illumina protocol with the TruSeq RNA Sample Preparation Kit Illumina HiSeq 2000 gds 301917082 GEO Accession GSM1917082