SRX1431849 GSM1940106 GSM1940106: OSKM Day 4 FLAG overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162881 GSM1940106 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940106 GEO Accession GSM1940106 SRX1431850 GSM1940107 GSM1940107: OSKM Day 4 FLAG overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162880 GSM1940107 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940107 GEO Accession GSM1940107 SRX1431851 GSM1940108 GSM1940108: OSKM Day 4 Jmjd3 overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162879 GSM1940108 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940108 GEO Accession GSM1940108 SRX1431852 GSM1940109 GSM1940109: OSKM Day 4 Jmjd3 overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162878 GSM1940109 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940109 GEO Accession GSM1940109 SRX1431853 GSM1940110 GSM1940110: OSKM Day 4 shRNA-Jmjd3 overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162877 GSM1940110 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940110 GEO Accession GSM1940110 SRX1431854 GSM1940111 GSM1940111: OSKM Day 4 shRNA-Jmjd3 overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162876 GSM1940111 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940111 GEO Accession GSM1940111 SRX1431855 GSM1940112 GSM1940112: OSKM Day 4 shRNA-Luc overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162875 GSM1940112 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940112 GEO Accession GSM1940112 SRX1431856 GSM1940113 GSM1940113: OSKM Day 4 shRNA-Luc overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162874 GSM1940113 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940113 GEO Accession GSM1940113 SRX1431857 GSM1940114 GSM1940114: OSKM Day 4 shRNA-Utx overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162873 GSM1940114 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940114 GEO Accession GSM1940114 SRX1431858 GSM1940115 GSM1940115: OSKM Day 4 shRNA-Utx overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162872 GSM1940115 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940115 GEO Accession GSM1940115 SRX1431859 GSM1940116 GSM1940116: OSKM Day 8 FLAG overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162871 GSM1940116 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940116 GEO Accession GSM1940116 SRX1431860 GSM1940117 GSM1940117: OSKM Day 8 FLAG overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162870 GSM1940117 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940117 GEO Accession GSM1940117 SRX1431861 GSM1940118 GSM1940118: OSKM Day 8 Jmjd3 overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162869 GSM1940118 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940118 GEO Accession GSM1940118 SRX1431862 GSM1940119 GSM1940119: OSKM Day 8 Jmjd3 overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162868 GSM1940119 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940119 GEO Accession GSM1940119 SRX1431863 GSM1940120 GSM1940120: OSKM Day 8 shRNA-Jmjd3 overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162867 GSM1940120 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940120 GEO Accession GSM1940120 SRX1431864 GSM1940121 GSM1940121: OSKM Day 8 shRNA-Jmjd3 overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162866 GSM1940121 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940121 GEO Accession GSM1940121 SRX1431865 GSM1940122 GSM1940122: OSKM Day 8 shRNA-Luc overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162865 GSM1940122 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940122 GEO Accession GSM1940122 SRX1431866 GSM1940123 GSM1940123: OSKM Day 8 shRNA-Luc overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162864 GSM1940123 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940123 GEO Accession GSM1940123 SRX1431867 GSM1940124 GSM1940124: OSKM Day 8 shRNA-Utx overexpression rep 1; Mus musculus; RNA-Seq SRP066186 SRS1162863 GSM1940124 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940124 GEO Accession GSM1940124 SRX1431868 GSM1940125 GSM1940125: OSKM Day 8 shRNA-Utx overexpression rep 2; Mus musculus; RNA-Seq SRP066186 SRS1162862 GSM1940125 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture’s instruction. RNA libraries were prepared for sequencing using standard Illumina protocols Illumina HiSeq 2000 gds 301940125 GEO Accession GSM1940125 SRX8181156 GSM4500873 GSM4500873: iPSCs (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540196 GSM4500873 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500873 GEO Accession GSM4500873 SRX8181157 GSM4500874 GSM4500874: MEF Jmjd3+/+ FLAG overexpression P2 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540197 GSM4500874 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500874 GEO Accession GSM4500874 SRX8181158 GSM4500875 GSM4500875: MEF Jmjd3+/+ FLAG overexpression P4 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540198 GSM4500875 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500875 GEO Accession GSM4500875 SRX8181159 GSM4500876 GSM4500876: MEF Jmjd3-/- P2 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540199 GSM4500876 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500876 GEO Accession GSM4500876 SRX8181160 GSM4500877 GSM4500877: MEF Jmjd3-/- P4 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540200 GSM4500877 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500877 GEO Accession GSM4500877 SRX8181161 GSM4500878 GSM4500878: MEF Jmjd3+/+ P2 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540201 GSM4500878 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500878 GEO Accession GSM4500878 SRX8181162 GSM4500879 GSM4500879: MEF Jmjd3+/+ P4 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540202 GSM4500879 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500879 GEO Accession GSM4500879 SRX8181163 GSM4500880 GSM4500880: MEF Jmjd3+/+ JMJD3 overexpression P2 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540203 GSM4500880 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500880 GEO Accession GSM4500880 SRX8181164 GSM4500881 GSM4500881: MEF Jmjd3+/+ JMJD3 overexpression P4 (RNA-seq); Mus musculus; RNA-Seq SRP066186 PRJNA302172 SRS6540204 GSM4500881 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from cells using TRIzol following the manufacture's instruction. Standard Illumina protocols Illumina HiSeq 2500 gds 304500881 GEO Accession GSM4500881