<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Amblyomma sculptum transcriptome" accession="SRX1544942">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1544942</PRIMARY_ID>
      <SUBMITTER_ID namespace="Federal University of Vicosa">Amblyomma sculptum transcriptome</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Midgut transcriptome of Amblyomma sculptum tick.</TITLE>
    <STUDY_REF accession="SRP068875">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP068875</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The midgut mRNA was constructed, amplified, and sequenced in Illumina HiSeq 2000 (Illumina, USA) by Beijing Genome Institute (Beijing, China), producing  53.1 million of high quality paired reads with 90 nucleotides (nt).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1262094">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1262094</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Midgut-illumina</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>180</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>91</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT alias="Transcriptome of Amblyomma sculptum" accession="SRX1550236">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1550236</PRIMARY_ID>
      <SUBMITTER_ID namespace="Federal University of Vicosa">Transcriptome of Amblyomma sculptum</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Ovary transcriptome of Amblyomma sculptum.</TITLE>
    <STUDY_REF accession="SRP068875">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP068875</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The ovary mRNA was constructed, amplified, and sequenced in Illumina HiSeq 2000 (Illumina, USA) by Beijing Genome Institute (Beijing, China), producing  45.4 million of high quality paired reads with 90 nucleotides (nt).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1266987">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1266987</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN04444435</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>ovary-illumina</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>180</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>91</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT alias="Amblyomma sculptum transcriptome - PGM" accession="SRX1590860">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1590860</PRIMARY_ID>
      <SUBMITTER_ID namespace="Federal University of Vicosa">Amblyomma sculptum transcriptome - PGM</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Midgut transcriptome of Amblyomma sculptum tick from PGM platform</TITLE>
    <STUDY_REF accession="SRP068875">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP068875</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The midgut library was constructed and sequenced in an Ion Torrent Personal Genome Machine at Núcleo de Análise de Biomoléculas (NuBioMol) (UFV, Brazil) using the Ion 318 v2 chip (Life Technologies, USA). The produced data set contain 3,6 million single reads with an average size of 143 nt.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1299552">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1299552</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN04497828</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Midgut-PGM</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ION_TORRENT>
        <INSTRUMENT_MODEL>Ion Torrent PGM</INSTRUMENT_MODEL>
      </ION_TORRENT>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT alias="MI-Ascu Illumina" accession="SRX1606599">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1606599</PRIMARY_ID>
      <SUBMITTER_ID namespace="Federal University of Vicosa">MI-Ascu Illumina</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Midgut infected of Amblyomma sculptum with Rickettsia amblyommii</TITLE>
    <STUDY_REF accession="SRP068875">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP068875</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The midgut mRNA was constructed, amplified, and sequenced in Illumina HiSeq 2000 (Illumina, USA) by Beijing Genome Institute (Beijing, China), producing  53 million of high quality paired reads.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1316172">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1316172</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>MI</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>180</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT alias="OI-Ascu Illumina" accession="SRX1606780">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1606780</PRIMARY_ID>
      <SUBMITTER_ID namespace="Federal University of Vicosa">OI-Ascu Illumina</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Ovary infected of Amblyomma sculptum with Rickettsia amblyommii</TITLE>
    <STUDY_REF accession="SRP068875">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP068875</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The midgut mRNA was constructed, amplified, and sequenced in Illumina HiSeq 2000 (Illumina, USA) by Beijing Genome Institute (Beijing, China), producing  49.2 million of high quality paired reads.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1316345">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1316345</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>180</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
