<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Sample_5KO" accession="SRX1547542">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1547542</PRIMARY_ID>
      <SUBMITTER_ID namespace="Rutgers, The State University of New Jersey">Sample_5KO</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Mouse brain Piwil1 KO small RNA</TITLE>
    <STUDY_REF accession="SRP068858">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP068858</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA was extracted using mirVana™ miRNA Isolation Kit (Ambion). Previously published RNA size-selection and periodate oxidation and beta elimination protocol were used to specifically select for 2’ o-methylated small RNAs (Ha, Song et al. 2014; Song, Liu et al. 2014).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1264338">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1264338</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>50</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
