SRR3340317 9eaae2f883717941202bc2105c09135d EE NIL bamUtils bam2fastq --splitRG 1.0.13 EF EE bwa mem 0.7.12-r1039 -t 6 -q 15 EG EF samtools 1.2 Using htslib 1.2.1 EH EG bamUtils dedup_LowMem --recab 1.0.13 --binMid --binQualS 2,3,10,20,25,30,35,40,50 EI EH samtools view -C 1.2 Using htslib 1.2.1 genome reference sequence retrieved from: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz assembly GRCh37 Alignment Provider IRC Harmonized