SRX1736919 P1_bacteria_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425539 SAMN04915194 P1_bacteria_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1736920 P2_bacteria_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425540 SAMN04915196 P2_bacteria_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1736921 P3_bacteria_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425541 SAMN04915198 P3_bacteria_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1736922 P4_bacteria_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425542 SAMN04915200 P4_bacteria_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1736923 P1_archaea_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425543 SAMN04915202 P1_archaea_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1736924 P2_archaea_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425544 SAMN04915204 P2_archaea_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1736925 P3_archaea_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425545 SAMN04915206 P3_archaea_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1736926 P4_archaea_forward SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425546 SAMN04915208 P4_archaea_forward AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1747482 archaea_reverse_P2 SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425568 SAMN04915205 archaea_reverse_P2 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1747483 archaea_reverse_P3 SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425569 SAMN04915207 archaea_reverse_P3 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1747484 archaea_reverse_P4 SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425570 SAMN04915209 archaea_reverse_P4 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX1747485 archaea_reverse_P1 SRP074185 PRJNA318563 About 20 ng of the amplicated sequences of each sample were pooled. For samples with low DNA yield up to 5 cycles were added. Ampliconpools were cleaned using Ampurebeads (Agencourt). Protein elimination and amplicon concentration were eliminated using MiElute columns (Qiagen). About 100 ng purified amplicons were used for the construction of the Illumina library using the Rapid DR Multiplex System 1-96 kit (NuGEN). Illumina librarys were size selected and sequenced using Illumina MiSeq Reagent Kits v3. SRS1425571 SAMN04915203 archaea_reverse_P1 AMPLICON METAGENOMIC PCR Illumina MiSeq