<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="B. coagulans DSM2314" accession="SRX1771740">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1771740</PRIMARY_ID>
      <SUBMITTER_ID namespace="Wageningen UR">B. coagulans DSM2314</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>B. Coagulans DSM2314 grown in the presence and absence of furfural</TITLE>
    <STUDY_REF accession="SRP075359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP075359</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>B. coagulans grown in the absence and presence of furfural. The RNA was acquired in the late exponential phase, when normally cells would be transferred to a reactor. This work will has been submitted for publication (van der Pol, E.C., Eggink, G. et al). DNA is also provided.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1443773">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1443773</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>1N_ATCACG_L001_R1_001_AHL7CTADXX.filt.fastq</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>50</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>Illumina Casava</PROGRAM>
          <VERSION>1.8.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
