SRX1982552 130314_LYNLEY_0303_AD1RRYACXX_L1_TAGCTT <STUDY_REF accession="SRP080041"> <IDENTIFIERS> <PRIMARY_ID>SRP080041</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">bp0</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Exome sequencing was performed on patient and both parents using the Agilent SureSelectXT HumanAllExon V4 (50 Mb) (Agilent Technologies). Amplified Pre-capture libraries (750 ng) were concentrated in 3 ml and hybridized to the target specific baits (SureSelectXT Human All Exon V4; Agilent Technologies) according to the manufacturer's recommendations. Captured libraries were pooled in pairs and paired-end sequenced on one lane of the Illumina HiSeq 2000 at the Stanford Center for Genomics and Personalized Medicine.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS1589252"> <IDENTIFIERS> <PRIMARY_ID>SRS1589252</PRIMARY_ID> <SUBMITTER_ID namespace="pda|fereshtehjahanbani2016">130314_LYNLEY_0303_AD1RRYACXX_L1_TAGCTT_pf.filtered.sorted.realigned.deduped.recalibrated</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>130314_LYNLEY_0303_AD1RRYACXX_L1_TAGCTT</LIBRARY_NAME> <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX1982553" alias="130314_LYNLEY_0303_AD1RRYACXX_L2_CTTGTA"> <IDENTIFIERS> <PRIMARY_ID>SRX1982553</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">130314_LYNLEY_0303_AD1RRYACXX_L2_CTTGTA</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP080041"> <IDENTIFIERS> <PRIMARY_ID>SRP080041</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">bp0</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Exome sequencing was performed on patient and both parents using the Agilent SureSelectXT HumanAllExon V4 (50 Mb) (Agilent Technologies). Amplified Pre-capture libraries (750 ng) were concentrated in 3 ml and hybridized to the target specific baits (SureSelectXT Human All Exon V4; Agilent Technologies) according to the manufacturer's recommendations. Captured libraries were pooled in pairs and paired-end sequenced on one lane of the Illumina HiSeq 2000 at the Stanford Center for Genomics and Personalized Medicine.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS1589253"> <IDENTIFIERS> <PRIMARY_ID>SRS1589253</PRIMARY_ID> <SUBMITTER_ID namespace="pda|fereshtehjahanbani2016">130314_LYNLEY_0303_AD1RRYACXX_L2_CTTGTA_pf.filtered.sorted.realigned.deduped.recalibrated</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>130314_LYNLEY_0303_AD1RRYACXX_L2_CTTGTA</LIBRARY_NAME> <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX1982554" alias="130424_HAVERS_0352_BD23NMACXX_L3_TAGCTT"> <IDENTIFIERS> <PRIMARY_ID>SRX1982554</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">130424_HAVERS_0352_BD23NMACXX_L3_TAGCTT</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP080041"> <IDENTIFIERS> <PRIMARY_ID>SRP080041</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">bp0</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Exome sequencing was performed on patient and both parents using the Agilent SureSelectXT HumanAllExon V4 (50 Mb) (Agilent Technologies). Amplified Pre-capture libraries (750 ng) were concentrated in 3 ml and hybridized to the target specific baits (SureSelectXT Human All Exon V4; Agilent Technologies) according to the manufacturer's recommendations. Captured libraries were pooled in pairs and paired-end sequenced on one lane of the Illumina HiSeq 2000 at the Stanford Center for Genomics and Personalized Medicine.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS1589254"> <IDENTIFIERS> <PRIMARY_ID>SRS1589254</PRIMARY_ID> <SUBMITTER_ID namespace="pda|fereshtehjahanbani2016">130424_HAVERS_0352_BD23NMACXX_L3_TAGCTT_pf.filtered.sorted.realigned.deduped.recalibrated</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>130424_HAVERS_0352_BD23NMACXX_L3_TAGCTT</LIBRARY_NAME> <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX1982555" alias="130314_LYNLEY_0303_AD1RRYACXX_L2_GGCTAC"> <IDENTIFIERS> <PRIMARY_ID>SRX1982555</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">130314_LYNLEY_0303_AD1RRYACXX_L2_GGCTAC</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP080041"> <IDENTIFIERS> <PRIMARY_ID>SRP080041</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">bp0</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Exome sequencing was performed on patient and both parents using the Agilent SureSelectXT HumanAllExon V4 (50 Mb) (Agilent Technologies). Amplified Pre-capture libraries (750 ng) were concentrated in 3 ml and hybridized to the target specific baits (SureSelectXT Human All Exon V4; Agilent Technologies) according to the manufacturer's recommendations. Captured libraries were pooled in pairs and paired-end sequenced on one lane of the Illumina HiSeq 2000 at the Stanford Center for Genomics and Personalized Medicine.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS1589255"> <IDENTIFIERS> <PRIMARY_ID>SRS1589255</PRIMARY_ID> <SUBMITTER_ID namespace="pda|fereshtehjahanbani2016">130314_LYNLEY_0303_AD1RRYACXX_L2_GGCTAC_pf.filtered.sorted.realigned.deduped.recalibrated</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>130314_LYNLEY_0303_AD1RRYACXX_L2_GGCTAC</LIBRARY_NAME> <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX1982556" alias="130314_LYNLEY_0303_AD1RRYACXX_L1_GATCAG"> <IDENTIFIERS> <PRIMARY_ID>SRX1982556</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">130314_LYNLEY_0303_AD1RRYACXX_L1_GATCAG</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP080041"> <IDENTIFIERS> <PRIMARY_ID>SRP080041</PRIMARY_ID> <SUBMITTER_ID namespace="SUB1688388">bp0</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Exome sequencing was performed on patient and both parents using the Agilent SureSelectXT HumanAllExon V4 (50 Mb) (Agilent Technologies). Amplified Pre-capture libraries (750 ng) were concentrated in 3 ml and hybridized to the target specific baits (SureSelectXT Human All Exon V4; Agilent Technologies) according to the manufacturer's recommendations. Captured libraries were pooled in pairs and paired-end sequenced on one lane of the Illumina HiSeq 2000 at the Stanford Center for Genomics and Personalized Medicine.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS1589256"> <IDENTIFIERS> <PRIMARY_ID>SRS1589256</PRIMARY_ID> <SUBMITTER_ID namespace="pda|fereshtehjahanbani2016">130314_LYNLEY_0303_AD1RRYACXX_L1_GATCAG_pf.filtered.sorted.realigned.deduped.recalibrated</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>130314_LYNLEY_0303_AD1RRYACXX_L1_GATCAG</LIBRARY_NAME> <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> </EXPERIMENT_SET>