<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="High Coverage Genome" accession="SRX2229843">
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      <PRIMARY_ID>SRX2229843</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">High Coverage Genome</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Demographic history of the critically endangered greater bamboo lemur (Prolemur simus), evidence of population bottlenecks.</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP091009</PRIMARY_ID>
        <EXTERNAL_ID namespace="SubPortal">SUB1984144</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>iTru dual indexed library preparation with custom adapters. KAPA Biosystems library preparation kit used.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS1733736</PRIMARY_ID>
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      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX2242761</PRIMARY_ID>
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    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
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        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
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      <DESIGN_DESCRIPTION>iTru style dual indexed Illumina libraries, shotgun sequenced on NextSeq platform.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS1743856</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN05853044</EXTERNAL_ID>
        </IDENTIFIERS>
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            <READ_INDEX>1</READ_INDEX>
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      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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      <PRIMARY_ID>SRX2242763</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">TORO8.24</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
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        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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      <DESIGN_DESCRIPTION>iTru style dual indexed Illumina libraries sequenced on NextSeq</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS1743857</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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      <PRIMARY_ID>SRX2242933</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">RANO355</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
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        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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      <DESIGN_DESCRIPTION>iTru style dual indexed Illumina libraries.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS1743949</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
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        </LIBRARY_LAYOUT>
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            <READ_TYPE>Forward</READ_TYPE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT alias="KIAN8.4_220insert" accession="SRX2242981">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2242981</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">KIAN8.4_220insert</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
    <STUDY_REF accession="SRP091009">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Truseq style library construction.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1743997">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1743997</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>KIAN8.4_220</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
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        </LIBRARY_LAYOUT>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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      <PRIMARY_ID>SRX2242982</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">KIAN8.4_280</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
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        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Truseq Illumina library</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS1743997</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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        </LIBRARY_LAYOUT>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT alias="KIAN8.4_800" accession="SRX2242983">
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      <PRIMARY_ID>SRX2242983</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">KIAN8.4_800</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
    <STUDY_REF accession="SRP091009">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Truseq Illumina library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1743997">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1743997</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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      <PRIMARY_ID>SRX2242984</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">KIAN8.4_6k</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>6k bp mate pair library</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS1743997</PRIMARY_ID>
        </IDENTIFIERS>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
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      <PRIMARY_ID>SRX2242985</PRIMARY_ID>
      <SUBMITTER_ID namespace="Smithsonian Institution">KIAN8.4_8k</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Prolemur simus Genome sequencing and assembly</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP091009</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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      <DESIGN_DESCRIPTION>8,000 base pair mate pair library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1743997">
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          <PRIMARY_ID>SRS1743997</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
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        </LIBRARY_LAYOUT>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
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      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
