SRS1631315 SAMN05603717 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 S. gallolyticus MLST_target_genome_1_abundance 11.78% MLST_target_genome_2 K. pneumoniae MLST_target_genome_2_abundance 4.77% MLST_target_genome_3 S. pseudointermedius MLST_target_genome_3_abundance 2.94% MLST_target_genome_4 C. upsaliensis MLST_target_genome_4_abundance 2.36% MLST_target_genome_5 not applicable MLST_target_genome_5_abundance not applicable BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631317 SAMN05603727 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 S. oralis MLST_target_genome_1_abundance 10.67% MLST_target_genome_2 P. pentosaceus MLST_target_genome_2_abundance 10.51% MLST_target_genome_3 C. difficile MLST_target_genome_3_abundance 3.63% MLST_target_genome_4 M. agalactiae MLST_target_genome_4_abundance 3.12% MLST_target_genome_5 not applicable MLST_target_genome_5_abundance not applicable BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631319 SAMN05603719 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 S. aureus MLST_target_genome_1_abundance 25.92% MLST_target_genome_2 S. suis MLST_target_genome_2_abundance 6.53% MLST_target_genome_3 B. licheniformis MLST_target_genome_3_abundance 5.14% MLST_target_genome_4 P. aeruginosa MLST_target_genome_4_abundance 3.17% MLST_target_genome_5 Y. ruckeri MLST_target_genome_5_abundance 1.81% BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631321 SAMN05603721 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 V. vulnificus MLST_target_genome_1_abundance 11.74% MLST_target_genome_2 S. dysgalactiae MLST_target_genome_2_abundance 5.24% MLST_target_genome_3 S. canis MLST_target_genome_3_abundance 4.77% MLST_target_genome_4 A. phagocytophilum MLST_target_genome_4_abundance 3.94% MLST_target_genome_5 C. jejuni MLST_target_genome_5_abundance 3.78% BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631323 SAMN05603723 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 P. sghielloides MLST_target_genome_1_abundance 14.83% MLST_target_genome_2 L. monocytogenes MLST_target_genome_2_abundance 12.81% MLST_target_genome_3 C. tropicalis MLST_target_genome_3_abundance 9.20% MLST_target_genome_4 E. coli MLST_target_genome_4_abundance 6.19% MLST_target_genome_5 not applicable MLST_target_genome_5_abundance not applicable BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631325 SAMN05603725 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 C. albicans MLST_target_genome_1_abundance 5.34% MLST_target_genome_2 E. faecium MLST_target_genome_2_abundance 3.97% MLST_target_genome_3 H. suis MLST_target_genome_3_abundance 1.19% MLST_target_genome_4 B. cereus MLST_target_genome_4_abundance 0.97% MLST_target_genome_5 S. enterica MLST_target_genome_5_abundance 0.87% BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631316 SAMN05603718 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 H. pylori MLST_target_genome_1_abundance 20.11% MLST_target_genome_2 S. pneumoniae MLST_target_genome_2_abundance 3.70% MLST_target_genome_3 L. salivarius MLST_target_genome_3_abundance 3.18% MLST_target_genome_4 V. cholerae MLST_target_genome_4_abundance 3.07% MLST_target_genome_5 not applicable MLST_target_genome_5_abundance not applicable BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631318 SAMN05603728 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 S. epidermidis MLST_target_genome_1_abundance 20.78% MLST_target_genome_2 E. cloacae MLST_target_genome_2_abundance 4.51% MLST_target_genome_3 C. glabrata MLST_target_genome_3_abundance 3.03% MLST_target_genome_4 K. oxytoca MLST_target_genome_4_abundance 1.54% MLST_target_genome_5 not applicable MLST_target_genome_5_abundance not applicable BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631320 SAMN05603720 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 M. catarrhalis MLST_target_genome_1_abundance 37.55% MLST_target_genome_2 P. fluorescens MLST_target_genome_2_abundance 10.12% MLST_target_genome_3 M. hyorhinis MLST_target_genome_3_abundance 4.42% MLST_target_genome_4 C. diphtheriae MLST_target_genome_4_abundance 4.07% MLST_target_genome_5 not applicable MLST_target_genome_5_abundance not applicable BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631322 SAMN05603722 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 P. agglomerans MLST_target_genome_1_abundance 11.82% MLST_target_genome_2 E. faecalis MLST_target_genome_2_abundance 11.15% MLST_target_genome_3 C. lari MLST_target_genome_3_abundance 8.48% MLST_target_genome_4 P. gingivalis MLST_target_genome_4_abundance 5.17% MLST_target_genome_5 P. multocida MLST_target_genome_5_abundance 3.05% BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631324 SAMN05603724 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 H. cinaedi MLST_target_genome_1_abundance 16.41% MLST_target_genome_2 V. parahaemolyticus MLST_target_genome_2_abundance 9.52% MLST_target_genome_3 M. haemolytica MLST_target_genome_3_abundance 7.25% MLST_target_genome_4 H. influenzae MLST_target_genome_4_abundance 6.96% MLST_target_genome_5 not applicable MLST_target_genome_5_abundance not applicable BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous SRS1631326 SAMN05603726 1235509 synthetic metagenome bioproject 339720 PRJNA339720 collection_date 2014 env_biome Synthetic Metagenome env_feature Reference Genomes env_material Bacteria geo_loc_name Italy: Trento lat_lon missing seq_method Illumina HiSeq read_length 101 total_species 50 MLST_target_genome_1 C. concisus MLST_target_genome_1_abundance 48.65% MLST_target_genome_2 S. thermophilus MLST_target_genome_2_abundance 14.95% MLST_target_genome_3 S. pyogenes MLST_target_genome_3_abundance 5.61% MLST_target_genome_4 S. malthophila MLST_target_genome_4_abundance 2.76% MLST_target_genome_5 P. freudenreichii MLST_target_genome_5_abundance 1.99% BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.miscellaneous