SRX2439826 shotgun_CP-2659 SRP095511 PRJNA356464 The shotgun library was prepared from genomic DNA with TruSeq DNA PCR-free kit followed by size selection with Pippin. This library was sequenced on the Illumina HiSeq X Ten platform. SRS1874418 SAMN06114300 shotgun_CP-2659 WGS GENOMIC size fractionation HiSeq X Ten SRX2439827 chicagoLibrary SRP095511 PRJNA356464 The Chicago library was prepared from genomic DNA as described by Meyer and Kircher (2010; https://dx.doi.org/10.1101/pdb.prot5448) and Putnam et al. (2016; https://dx.doi.org/10.1101/gr.193474.115) followed by size selection with Pippin achieving over 200 kbp inserts. This library was sequenced on the Illumina HiSeq 2500 platform. SRS1874418 SAMN06114300 chicagoLibrary OTHER GENOMIC size fractionation Illumina HiSeq 2500 SRX2439828 shotgun_CP-2658 SRP095511 PRJNA356464 The shotgun library was prepared from genomic DNA with TruSeq DNA PCR-free kit followed by size selection with Pippin. This library was sequenced on the Illumina HiSeq X Ten platform. SRS1874418 SAMN06114300 shotgun_CP-2658 WGS GENOMIC size fractionation HiSeq X Ten SRX2439829 shotgun_CP-3086 SRP095511 PRJNA356464 The shotgun library was prepared from genomic DNA with TruSeq DNA PCR-free kit followed by size selection with Pippin. This library was sequenced on the Illumina HiSeq X Ten platform. SRS1874418 SAMN06114300 shotgun_CP-3086 WGS GENOMIC size fractionation HiSeq X Ten