<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX2568280" alias="HIHG_S_1_13_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568280</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_13_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_13</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984636" refcenter="phs001046" refname="S_1_13">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984636</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_13</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_13_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568281" alias="HIHG_S_1_41_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568281</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_41_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_41</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984637" refcenter="phs001046" refname="S_1_41">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984637</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_41</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_41_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568282" alias="HIHG_S_1_5_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568282</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_5_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_5</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984638" refcenter="phs001046" refname="S_1_5">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984638</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_5</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_5_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568283" alias="HIHG_S_1_57_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568283</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_57_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_57</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984639" refcenter="phs001046" refname="S_1_57">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984639</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_57</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_57_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568284" alias="HIHG_S_1_78_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568284</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_78_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_78</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984640" refcenter="phs001046" refname="S_1_78">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984640</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_78</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_78_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568285" alias="HIHG_S_1_79_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568285</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_79_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_79</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984641" refcenter="phs001046" refname="S_1_79">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984641</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_79</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_79_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568286" alias="HIHG_S_1_80_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568286</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_80_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_80</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984642" refcenter="phs001046" refname="S_1_80">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984642</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_80</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_80_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568287" alias="HIHG_S_1_86_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568287</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_86_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_86</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984643" refcenter="phs001046" refname="S_1_86">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984643</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_86</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_86_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568288" alias="HIHG_S_1_88_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568288</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_88_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_88</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984644" refcenter="phs001046" refname="S_1_88">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984644</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_88</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_88_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2568289" alias="HIHG_S_1_99_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568289</PRIMARY_ID>
      <SUBMITTER_ID namespace="HIGH-phs001046">HIHG_S_1_99_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequenced individual with progression of AMD and treatment: Sample S_1_99</TITLE>
    <STUDY_REF accession="SRP089737">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP089737</PRIMARY_ID>
        <EXTERNAL_ID namespace="dbGaP">phs001046</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Preparation was done on two Perkin Elmer Sciclone G3 and one Zephyr liquid handling workstations. Samples were processed in 96 well plates. DNA was then quantitated using the Qubit dsDNA Assay.Samples are then queued for library preparation and target enrichment according to the Agilent SureSelect XT Target Enrichment protocol for Illumina Paired End sequencing. Sequencing was done using Illumina Hiseq 2000. Data processing is done first using Hiseq Real Time Analysis software Casava (if this fails Bustard is used instead), then files turned into zipped fastq files with raw read and base qualities.Fastq sequences are aligned to hg19 with Burrows-Wheeler Aligner."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS1984645" refcenter="phs001046" refname="S_1_99">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984645</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001046">S_1_99</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HIHG_S_1_99_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>198</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
