<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="GSM2494218" accession="SRX2568497">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568497</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM2494218</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM2494218: WT rep1; Helicobacter pylori J99; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP100095" refname="GSE95006">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP100095</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS1984852">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984852</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM2494218</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mini Qiagen columns and a Qiagen RNeasy mini kit (Qiagen, Valencia, CA) were used for RNA extraction. Ribosomal RNA was depleted according to the manufacturer's instruction using Bacteria MinusTM Transcriptome Isolation Kit (Invitrogen Life Technologies). The Applied Biosystems SOLiD™ Total RNA-Seq kit was used to generate the cDNA template library.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ABI_SOLID>
        <INSTRUMENT_MODEL>AB 5500xl Genetic Analyzer</INSTRUMENT_MODEL>
      </ABI_SOLID>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>302494218</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM2494218</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM2494219" accession="SRX2568498">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568498</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM2494219</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM2494219: Mutant rep1; Helicobacter pylori J99; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP100095" refname="GSE95006">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP100095</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS1984853">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984853</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM2494219</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mini Qiagen columns and a Qiagen RNeasy mini kit (Qiagen, Valencia, CA) were used for RNA extraction. Ribosomal RNA was depleted according to the manufacturer's instruction using Bacteria MinusTM Transcriptome Isolation Kit (Invitrogen Life Technologies). The Applied Biosystems SOLiD™ Total RNA-Seq kit was used to generate the cDNA template library.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ABI_SOLID>
        <INSTRUMENT_MODEL>AB 5500xl Genetic Analyzer</INSTRUMENT_MODEL>
      </ABI_SOLID>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>302494219</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM2494219</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM2494220" accession="SRX2568499">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568499</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM2494220</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM2494220: WT rep2; Helicobacter pylori J99; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP100095" refname="GSE95006">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP100095</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS1984854">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984854</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM2494220</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mini Qiagen columns and a Qiagen RNeasy mini kit (Qiagen, Valencia, CA) were used for RNA extraction. Ribosomal RNA was depleted according to the manufacturer's instruction using Bacteria MinusTM Transcriptome Isolation Kit (Invitrogen Life Technologies). The Applied Biosystems SOLiD™ Total RNA-Seq kit was used to generate the cDNA template library.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ABI_SOLID>
        <INSTRUMENT_MODEL>AB 5500xl Genetic Analyzer</INSTRUMENT_MODEL>
      </ABI_SOLID>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>302494220</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM2494220</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM2494221" accession="SRX2568500">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568500</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM2494221</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM2494221: Mutant rep2; Helicobacter pylori J99; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP100095" refname="GSE95006">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP100095</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS1984855">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984855</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM2494221</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mini Qiagen columns and a Qiagen RNeasy mini kit (Qiagen, Valencia, CA) were used for RNA extraction. Ribosomal RNA was depleted according to the manufacturer's instruction using Bacteria MinusTM Transcriptome Isolation Kit (Invitrogen Life Technologies). The Applied Biosystems SOLiD™ Total RNA-Seq kit was used to generate the cDNA template library.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ABI_SOLID>
        <INSTRUMENT_MODEL>AB 5500xl Genetic Analyzer</INSTRUMENT_MODEL>
      </ABI_SOLID>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>302494221</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM2494221</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM2494222" accession="SRX2568501">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568501</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM2494222</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM2494222: WT rep3; Helicobacter pylori J99; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP100095" refname="GSE95006">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP100095</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS1984856">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984856</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM2494222</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mini Qiagen columns and a Qiagen RNeasy mini kit (Qiagen, Valencia, CA) were used for RNA extraction. Ribosomal RNA was depleted according to the manufacturer's instruction using Bacteria MinusTM Transcriptome Isolation Kit (Invitrogen Life Technologies). The Applied Biosystems SOLiD™ Total RNA-Seq kit was used to generate the cDNA template library.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ABI_SOLID>
        <INSTRUMENT_MODEL>AB 5500xl Genetic Analyzer</INSTRUMENT_MODEL>
      </ABI_SOLID>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>302494222</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM2494222</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM2494223" accession="SRX2568502">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2568502</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM2494223</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM2494223: Mutant rep3; Helicobacter pylori J99; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP100095" refname="GSE95006">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP100095</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS1984857">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS1984857</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM2494223</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mini Qiagen columns and a Qiagen RNeasy mini kit (Qiagen, Valencia, CA) were used for RNA extraction. Ribosomal RNA was depleted according to the manufacturer's instruction using Bacteria MinusTM Transcriptome Isolation Kit (Invitrogen Life Technologies). The Applied Biosystems SOLiD™ Total RNA-Seq kit was used to generate the cDNA template library.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ABI_SOLID>
        <INSTRUMENT_MODEL>AB 5500xl Genetic Analyzer</INSTRUMENT_MODEL>
      </ABI_SOLID>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>302494223</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM2494223</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
