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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX2661917" alias="Yc48827 4X-5 2015-12-27 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661917</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 4X-5 2015-12-27 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: Seedlings at 4X radicle length</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063893">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063893</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624810</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 4X-5 2015-12-27 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2661918" alias="Yc48827 1X-1 2015-12-23 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661918</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 1X-1 2015-12-23 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: Seedlings at 1X radicle length</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063894">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063894</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624809</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 1X-1 2015-12-23 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2661919" alias="Yc48827 RE-2 2015-12-17 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661919</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 RE-2 2015-12-17 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: Seeds at radicle emergence</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063895">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063895</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624808</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 RE-2 2015-12-17 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2661920" alias="Yc48827 W84-A 2015-12-14 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661920</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 W84-A 2015-12-14 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: Seeds after cold stratification</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063896">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063896</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624807</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 W84-A 2015-12-14 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2661921" alias="Yc48827 28W-1 2015-09-21 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661921</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 28W-1 2015-09-21 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: Seeds after warm stratification</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063897">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063897</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624806</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 28W-1 2015-09-21 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2661922" alias="Yc48827 3D-3 2015-08-24 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661922</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 3D-3 2015-08-24 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: Seeds after imbibition</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063898">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063898</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624805</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 3D-3 2015-08-24 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2661923" alias="Yc48827 Dry 2016-11-17 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661923</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 Dry 2016-11-17 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: Mature dry seeds</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063899">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063899</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624804</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 Dry 2016-11-17 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2661924" alias="Yc48827 E1-EM 2015-08-14 CIK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2661924</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2510499">Yc48827 E1-EM 2015-08-14 CIK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-Seq of Callitropsis nootkatensis: First year seeds</TITLE>
    <STUDY_REF accession="SRP102308">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP102308</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA379985</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA was extracted using PureLink Plant RNA Reagent (Ambion) and further purified by RNeasy Plant Mini (Qiagen).  RNA quality and quantity were assessed by NanoDrop spectrophotometer and the Bioanalyzer RNA 6000 Nano Kit (Agilent).  Sequencing was completed at the McGill University and Gnome Qubec Innovation Centre, Montral, Canada.  rRNA-depleted libraries (Plant Leaf Ribo-Zero, Illumina) were prepared using the KAPA Stranded RNA-Seq Library Preparation Kit (KAPA Biosystems) and were paired-end sequenced on an Illumina HiSeq 2500 with 125 bp reads, using multiplexing to sequence four libraries per lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2063900">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2063900</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06624803</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Yc48827 E1-EM 2015-08-14 CIK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
