SRX2683629 GSM2559453 SRP102698 SRS2080836 GSM2559453 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559453 GSM2559453 GEO Accession GSM2559453 SRX2683630 GSM2559454 SRP102698 SRS2080837 GSM2559454 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559454 GSM2559454 GEO Accession GSM2559454 SRX2683631 GSM2559455 SRP102698 SRS2080839 GSM2559455 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559455 GSM2559455 GEO Accession GSM2559455 SRX2683632 GSM2559456 SRP102698 SRS2080838 GSM2559456 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559456 GSM2559456 GEO Accession GSM2559456 SRX2683633 GSM2559457 SRP102698 SRS2080840 GSM2559457 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559457 GSM2559457 GEO Accession GSM2559457 SRX2683634 GSM2559458 SRP102698 SRS2080841 GSM2559458 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559458 GSM2559458 GEO Accession GSM2559458 SRX2683635 GSM2559459 SRP102698 SRS2080842 GSM2559459 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559459 GSM2559459 GEO Accession GSM2559459 SRX2683636 GSM2559460 SRP102698 SRS2080843 GSM2559460 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559460 GSM2559460 GEO Accession GSM2559460 SRX2683637 GSM2559461 SRP102698 SRS2080844 GSM2559461 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559461 GSM2559461 GEO Accession GSM2559461 SRX2683638 GSM2559462 SRP102698 SRS2080845 GSM2559462 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559462 GSM2559462 GEO Accession GSM2559462 SRX2683639 GSM2559463 SRP102698 SRS2080846 GSM2559463 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559463 GSM2559463 GEO Accession GSM2559463 SRX2683640 GSM2559464 SRP102698 SRS2080847 GSM2559464 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using the NucleoSpin® RNA Plant kit from Macherey-Nagel according to the manufacturer's instructions. Subsequently, contaminating DNA was removed using the Turbo DNA-free kit from Ambion according to the manufacturer's instructions. RNA quality and integrity was assessed on a QIAxcel platform (Qiagen, Hilden, Germany). The TruSeq® Stranded mRNA sample preparation 96 rcx kit (Illumina™) following the low sample protocol according to Illumina™ guidelines was used to construct the library using 2.5 µg of total RNA. Adaptors were ligated in 12-plex formations and the libraries were quantified using PicoGreen® (Life Technologies™). Groups of 12 samples were pooled at equal concentrations to create the eight pools. The Kapa SYBR® FAST universal qPCR kit (Kapa Biosystems™) for Illumina™ sequencing was used to quantify the number of the amplifiable molecules in the pools and the Bioanalyzer® (Agilent Technologies™) to determine the average fragment size of our pools and optimization of the flow cell clustering. An illumina HiSeq 1500 sequencer was used in the high throughput mode using the TruSeq® SBS Kit in a 50-cycle pair-end run. Illumina HiSeq 1500 gds 302559464 GSM2559464 GEO Accession GSM2559464