SRX2763643 GSM2588818 SRP105182 SRS2148210 GSM2588818 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588818 GSM2588818 GEO Accession GSM2588818 SRX2763644 GSM2588819 SRP105182 SRS2148209 GSM2588819 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588819 GSM2588819 GEO Accession GSM2588819 SRX2763645 GSM2588820 SRP105182 SRS2148208 GSM2588820 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588820 GSM2588820 GEO Accession GSM2588820 SRX2763646 GSM2588821 SRP105182 SRS2148206 GSM2588821 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588821 GSM2588821 GEO Accession GSM2588821 SRX2763647 GSM2588822 SRP105182 SRS2148214 GSM2588822 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588822 GSM2588822 GEO Accession GSM2588822 SRX2763648 GSM2588823 SRP105182 SRS2148219 GSM2588823 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588823 GSM2588823 GEO Accession GSM2588823 SRX2763649 GSM2588824 SRP105182 SRS2148212 GSM2588824 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588824 GSM2588824 GEO Accession GSM2588824 SRX2763650 GSM2588825 SRP105182 SRS2148211 GSM2588825 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588825 GSM2588825 GEO Accession GSM2588825 SRX2763651 GSM2588826 SRP105182 SRS2148213 GSM2588826 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588826 GSM2588826 GEO Accession GSM2588826 SRX2763652 GSM2588827 SRP105182 SRS2148218 GSM2588827 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588827 GSM2588827 GEO Accession GSM2588827 SRX2763653 GSM2588828 SRP105182 SRS2148216 GSM2588828 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588828 GSM2588828 GEO Accession GSM2588828 SRX2763654 GSM2588829 SRP105182 SRS2148215 GSM2588829 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588829 GSM2588829 GEO Accession GSM2588829 SRX2763655 GSM2588830 SRP105182 SRS2148217 GSM2588830 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588830 GSM2588830 GEO Accession GSM2588830 SRX2763656 GSM2588831 SRP105182 SRS2148220 GSM2588831 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588831 GSM2588831 GEO Accession GSM2588831 SRX2763657 GSM2588832 SRP105182 SRS2148223 GSM2588832 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588832 GSM2588832 GEO Accession GSM2588832 SRX2763658 GSM2588833 SRP105182 SRS2148224 GSM2588833 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588833 GSM2588833 GEO Accession GSM2588833 SRX2763659 GSM2588834 SRP105182 SRS2148221 GSM2588834 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588834 GSM2588834 GEO Accession GSM2588834 SRX2763660 GSM2588835 SRP105182 SRS2148222 GSM2588835 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588835 GSM2588835 GEO Accession GSM2588835 SRX2763661 GSM2588836 SRP105182 SRS2148225 GSM2588836 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588836 GSM2588836 GEO Accession GSM2588836 SRX2763662 GSM2588837 SRP105182 SRS2148228 GSM2588837 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588837 GSM2588837 GEO Accession GSM2588837 SRX2763663 GSM2588838 SRP105182 SRS2148226 GSM2588838 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588838 GSM2588838 GEO Accession GSM2588838 SRX2763664 GSM2588839 SRP105182 SRS2148227 GSM2588839 Bisulfite-Seq GENOMIC RANDOM Genomic DNA was isolated using DNAzol Sequencing libraries were manually generated for high-throughput sequencing. Either end of DNA strands was filled using the Epicentre DNA END-Repair kit (Epicentre Biotechnologies, Madison, WI). Adenine was added at 3’ ends by Taq DNA polymerase (New England Biolabs, Beverly, MA) under dATP conditions. Adaptor oligomers was ligated at both ends using Quick Ligation kit (Qiagen, Germantown, MD). Bisulfite treated DNA libraries were amplified using Solexa primers (Illumina, San Diego, CA) and Phusion PCR master mix (Thermo Scientific, Hudson, NH). Illumina HiSeq 2000 gds 302588839 GSM2588839 GEO Accession GSM2588839