<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="GEO" alias="GSE98242" accession="SRP105275">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP105275</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA384377</EXTERNAL_ID>
      <EXTERNAL_ID namespace="GEO">GSE98242</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>The AP-1 Transcription Factor JunB Is Required for Th17 Cell Differentiation</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Transcriptome Analysis"/>
      <STUDY_ABSTRACT>Interleukin (IL)-17-producing T helper (Th17) cells are crucial for host defense against extracellular microbes and pathogenesis of autoimmune diseases.  Here we show that the AP-1 transcription factor JunB is required for Th17 cell development.  Junb-deficient CD4+ T cells are able to develop in vitro into various helper T subsets except Th17.  The RNA-seq transcriptome analysis reveals that JunB is crucial for the Th17-specific gene expression program.  Junb-deficient mice are completely resistant to experimental autoimmune encephalomyelitis, a Th17-mediated inflammatory disease, and naive T helper cells from such mice fail to differentiate into Th17 cells.  JunB appears to activate Th17 signature genes by forming a heterodimer with BATF, another AP-1 factor essential for Th17 differentiation.  The mechanism whereby JunB controls Th17 cell development likely involves activation of the genes for the Th17 lineage-specifying orphan receptors ROR?t and ROR? and reduced expression of Foxp3, a transcription factor known to antagonize ROR?t function. Overall design: Naïve T cell, Th0 and Th17 mRNA profiles of wild type (WT) and Junb-/- mice were generated by deep sequencing, using Illumina HiSeq2500</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>GSE98242</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>29234109</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
