<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX2770373" alias="K-RasV12+ITGAV-RFP-MDCK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2770373</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2613283">K-RasV12+ITGAV-RFP-MDCK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-seq of MDCK II cell line expressing K-RasV12 and ITGAV</TITLE>
    <STUDY_REF accession="SRP105485">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP105485</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA382611</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA was extracted from the cells using Trizol Reagent (Life Technologies).  The concentration and quality of RNA samples were determined using a Nano Drop 2000 micro-volume spectrophotometer (Thermo Scientific).  The library construction and sequencing were performed by the Beijing Genomics Institute (BGI)-Hongkong, China (http://www.bgitechsolutions.com/), as described previously.  Paired end, 100-bp read-length sequencing was carried out using Illumina HiSeq 2000 and 40 million reads were generated for each sample.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2153874">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2153874</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06844167</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>K-RasV12+ITGAV-RFP-MDCK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2770374" alias="K-RasV12-MDCK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2770374</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2613283">K-RasV12-MDCK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-seq of MDCK II cell line expressing K-RasV12</TITLE>
    <STUDY_REF accession="SRP105485">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP105485</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA382611</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA was extracted from the cells using Trizol Reagent (Life Technologies).  The concentration and quality of RNA samples were determined using a Nano Drop 2000 micro-volume spectrophotometer (Thermo Scientific).  The library construction and sequencing were performed by the Beijing Genomics Institute (BGI)-Hongkong, China (http://www.bgitechsolutions.com/), as described previously.  Paired end, 100-bp read-length sequencing was carried out using Illumina HiSeq 2000 and 40 million reads were generated for each sample.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2153875">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2153875</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06844166</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>K-RasV12-MDCK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2770375" alias="ITGAV-RFP-MDCK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2770375</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2613283">ITGAV-RFP-MDCK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-seq of MDCK II cell line expressing ITGAV</TITLE>
    <STUDY_REF accession="SRP105485">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP105485</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA382611</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA was extracted from the cells using Trizol Reagent (Life Technologies).  The concentration and quality of RNA samples were determined using a Nano Drop 2000 micro-volume spectrophotometer (Thermo Scientific).  The library construction and sequencing were performed by the Beijing Genomics Institute (BGI)-Hongkong, China (http://www.bgitechsolutions.com/), as described previously.  Paired end, 100-bp read-length sequencing was carried out using Illumina HiSeq 2000 and 40 million reads were generated for each sample.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2153876">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2153876</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06844165</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>ITGAV-RFP-MDCK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX2770376" alias="MDCK">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX2770376</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB2613283">MDCK</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNA-seq of MDCK II cell line</TITLE>
    <STUDY_REF accession="SRP105485">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP105485</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA382611</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA was extracted from the cells using Trizol Reagent (Life Technologies).  The concentration and quality of RNA samples were determined using a Nano Drop 2000 micro-volume spectrophotometer (Thermo Scientific).  The library construction and sequencing were performed by the Beijing Genomics Institute (BGI)-Hongkong, China (http://www.bgitechsolutions.com/), as described previously.  Paired end, 100-bp read-length sequencing was carried out using Illumina HiSeq 2000 and 40 million reads were generated for each sample.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2153877">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2153877</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN06844164</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>MDCK</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
