SRX2912079 GSM2665630 SRP109030 SRS2278366 GSM2665630 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from treated and none treated cells. Sequencing libraries were prepared according to the Illumina TruSeq Stranded mRNA Sample Prep Kit (according to manufacturer’s protocol) (Illumina, San Diego, CA). A 2 × 101 bp pairedend sequencing was performed on the HiSeq2000 instrument, using half a lane per sample, to produce on average 80 million read pairs per sample (160 million sequences) with an average insert length of 130 bp. Trimmomatic,52 Tophat2,53 Picard suite (http://www.broadinstittute.github.io/picard), RNA-SeQC,54 and in-house metrics were used to evaluate data quality. Illumina HiSeq 2000 gds 302665630 GSM2665630 GEO Accession GSM2665630 SRX2912080 GSM2665631 SRP109030 SRS2278367 GSM2665631 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from treated and none treated cells. Sequencing libraries were prepared according to the Illumina TruSeq Stranded mRNA Sample Prep Kit (according to manufacturer’s protocol) (Illumina, San Diego, CA). A 2 × 101 bp pairedend sequencing was performed on the HiSeq2000 instrument, using half a lane per sample, to produce on average 80 million read pairs per sample (160 million sequences) with an average insert length of 130 bp. Trimmomatic,52 Tophat2,53 Picard suite (http://www.broadinstittute.github.io/picard), RNA-SeQC,54 and in-house metrics were used to evaluate data quality. Illumina HiSeq 2000 gds 302665631 GSM2665631 GEO Accession GSM2665631 SRX2912081 GSM2665632 SRP109030 SRS2278368 GSM2665632 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from treated and none treated cells. Sequencing libraries were prepared according to the Illumina TruSeq Stranded mRNA Sample Prep Kit (according to manufacturer’s protocol) (Illumina, San Diego, CA). A 2 × 101 bp pairedend sequencing was performed on the HiSeq2000 instrument, using half a lane per sample, to produce on average 80 million read pairs per sample (160 million sequences) with an average insert length of 130 bp. Trimmomatic,52 Tophat2,53 Picard suite (http://www.broadinstittute.github.io/picard), RNA-SeQC,54 and in-house metrics were used to evaluate data quality. Illumina HiSeq 2000 gds 302665632 GSM2665632 GEO Accession GSM2665632 SRX2912082 GSM2665633 SRP109030 SRS2278369 GSM2665633 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from treated and none treated cells. Sequencing libraries were prepared according to the Illumina TruSeq Stranded mRNA Sample Prep Kit (according to manufacturer’s protocol) (Illumina, San Diego, CA). A 2 × 101 bp pairedend sequencing was performed on the HiSeq2000 instrument, using half a lane per sample, to produce on average 80 million read pairs per sample (160 million sequences) with an average insert length of 130 bp. Trimmomatic,52 Tophat2,53 Picard suite (http://www.broadinstittute.github.io/picard), RNA-SeQC,54 and in-house metrics were used to evaluate data quality. Illumina HiSeq 2000 gds 302665633 GSM2665633 GEO Accession GSM2665633 SRX2912083 GSM2665634 SRP109030 SRS2278370 GSM2665634 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from treated and none treated cells. Sequencing libraries were prepared according to the Illumina TruSeq Stranded mRNA Sample Prep Kit (according to manufacturer’s protocol) (Illumina, San Diego, CA). A 2 × 101 bp pairedend sequencing was performed on the HiSeq2000 instrument, using half a lane per sample, to produce on average 80 million read pairs per sample (160 million sequences) with an average insert length of 130 bp. Trimmomatic,52 Tophat2,53 Picard suite (http://www.broadinstittute.github.io/picard), RNA-SeQC,54 and in-house metrics were used to evaluate data quality. Illumina HiSeq 2000 gds 302665634 GSM2665634 GEO Accession GSM2665634 SRX2912084 GSM2665635 SRP109030 SRS2278371 GSM2665635 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted from treated and none treated cells. Sequencing libraries were prepared according to the Illumina TruSeq Stranded mRNA Sample Prep Kit (according to manufacturer’s protocol) (Illumina, San Diego, CA). A 2 × 101 bp pairedend sequencing was performed on the HiSeq2000 instrument, using half a lane per sample, to produce on average 80 million read pairs per sample (160 million sequences) with an average insert length of 130 bp. Trimmomatic,52 Tophat2,53 Picard suite (http://www.broadinstittute.github.io/picard), RNA-SeQC,54 and in-house metrics were used to evaluate data quality. Illumina HiSeq 2000 gds 302665635 GSM2665635 GEO Accession GSM2665635