SRP113347 PRJNA395393 Root-associated bacterial metagenome Raw sequence reads We investigated the spatial patterns of bulk soil, rhizosphere and endosphere bacterial communities across 53 soybean fields in China. Root-associated bacterial metagenome SRP113348 PRJNA395263 Bulk soil and soybean rhizosphere associated fungus metagenome Raw sequence reads Bulk soil and rhizosphere fungal communities across 51 soybean fields in China were investigated. Bulk soil and soybean rhizosphere associated fungus metagenome