<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE alias="Oryza granulata" accession="SRS2595759">
    <IDENTIFIERS>
      <PRIMARY_ID>SRS2595759</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMN07723085</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>Oryza granulata whole genome sequencing</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>110450</TAXON_ID>
      <SCIENTIFIC_NAME>Oryza meyeriana var. granulata</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>Oryza granulata is a wild rice species that is found in Southeast Asia. It is defined as GG genome and placed on the basal lineage in Oryza. Oryza granulata contain many valuable genes such as resistance to bacterial blight, blast  and  hopper, tolerance to shade and drought.This genome sequencing provide a powerful tool for future Oryza study and rice improvement.</DESCRIPTION>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>note</TAG>
        <VALUE>plants derived from the same tissue culture seeding WG-9; ecotype erectness</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolate</TAG>
        <VALUE>YNKM20150326</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>cultivar</TAG>
        <VALUE>not applicable</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ecotype</TAG>
        <VALUE>missing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>age</TAG>
        <VALUE>1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>dev_stage</TAG>
        <VALUE>mature stage</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_name</TAG>
        <VALUE>China: Yunnan, Tengchong</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>tissue</TAG>
        <VALUE>young leaves</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>biomaterial_provider</TAG>
        <VALUE>Qiong Luo, Yunnan Agricultural University</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collected_by</TAG>
        <VALUE>Zhigang Wu</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection_date</TAG>
        <VALUE>2015-03-26</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>disease</TAG>
        <VALUE>no disease</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>disease_stage</TAG>
        <VALUE>not applicable</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>genotype</TAG>
        <VALUE>GG genome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>growth_protocol</TAG>
        <VALUE>Beijing greenhouse: 28℃ at daytime; 24℃ at night; natural lighting; 75% relative humidity</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>height_or_length</TAG>
        <VALUE>plant height is about 35cm</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation_source</TAG>
        <VALUE>Volcanic Field</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>lat_lon</TAG>
        <VALUE>25.03 N 98.50 E</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>phenotype</TAG>
        <VALUE>The wild relatives of rice: a genetic resources handbook : Short (usually &lt;1 m) herb, lanceolate, dark green leaves; spikelets &lt;6.4 mm, always awnless, with granulate texture to palea and lemma.</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>population</TAG>
        <VALUE>inbred line with 0.14% heterozygosity</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>tissue sample</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>temp</TAG>
        <VALUE>28℃</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>treatment</TAG>
        <VALUE>not treatment</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>variety</TAG>
        <VALUE>granulata</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>BioSampleModel</TAG>
        <VALUE>Plant</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
  <SAMPLE alias="Oryza granulata fosmid" accession="SRS2595760">
    <IDENTIFIERS>
      <PRIMARY_ID>SRS2595760</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMN07723086</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>Oryza granulata whole genome sequencing</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>4527</TAXON_ID>
      <SCIENTIFIC_NAME>Oryza</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>Oryza granulata is a wild rice species that is found in Southeast Asia. It is defined as GG genome and placed on the basal lineage in Oryza. Oryza granulata contain many valuable genes such as resistance to bacterial blight, blast  and  hopper, tolerance to shade and drought.This genome sequencing provide a powerful tool for future Oryza study and rice improvement.</DESCRIPTION>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolate</TAG>
        <VALUE>YNKMF20150326</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>note</TAG>
        <VALUE>plants derived from the same tissue culture seeding WG-9; erectness</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>cultivar</TAG>
        <VALUE>not applicable</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ecotype</TAG>
        <VALUE>missing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>age</TAG>
        <VALUE>1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>dev_stage</TAG>
        <VALUE>mature stage</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_name</TAG>
        <VALUE>China: Yunnan, Tengchong</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>tissue</TAG>
        <VALUE>young leaves</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>biomaterial_provider</TAG>
        <VALUE>Qiong Luo, Yunnan Agricultural University</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collected_by</TAG>
        <VALUE>Zhigang Wu</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection_date</TAG>
        <VALUE>2015-03-26</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>disease</TAG>
        <VALUE>no disease</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>disease_stage</TAG>
        <VALUE>not applicable</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>genotype</TAG>
        <VALUE>fosmid</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>growth_protocol</TAG>
        <VALUE>Beijing greenhouse: 28℃ at daytime; 24℃ at night; natural lighting; 75% relative humidity</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>height_or_length</TAG>
        <VALUE>plant height is about 35cm</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation_source</TAG>
        <VALUE>Volcanic Field</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>lat_lon</TAG>
        <VALUE>25.03 N 98.50 E</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>phenotype</TAG>
        <VALUE>The wild relatives of rice: a genetic resources handbook : Short (usually &lt;1 m) herb, lanceolate, dark green leaves; spikelets &lt;6.4 mm, always awnless, with granulate texture to palea and lemma.</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>population</TAG>
        <VALUE>inbred line with 0.14% heterozygosity</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>tissue sample</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sex</TAG>
        <VALUE>hermaphrodite</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>temp</TAG>
        <VALUE>28℃</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>treatment</TAG>
        <VALUE>not treatment</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>BioSampleModel</TAG>
        <VALUE>Plant</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
