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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX3371909" alias="SSC01">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3371909</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3203484">SSC01</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Staphylococcus saprophyticus SSC01</TITLE>
    <STUDY_REF accession="SRP092612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP092612</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA352403</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>modified Nextera protocol as decribed by Baym et al. with a reconditioning PCR with fresh primers and polymerase for an additional 5 PCR cycles,  two-step bead based size selection with target fragment sizeof 650 bp, sequenced on an Illumina HiSeq 2500 (paired-end, 150 bp)</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS2669245</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|tatumdmortimer@era">SSC01</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3371910" alias="43">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3371910</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3203484">43</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Staphylococcus saprophyticus 43</TITLE>
    <STUDY_REF accession="SRP092612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP092612</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA352403</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>TruSeq Nano DNA LT Library Prep Kit, 200 ng of each sample was sheared using a Covaris M220 Ultrasonicator, sheared samples were size selected for an average insert size of 550 bp using Spri bead based size exclusion, Paired-end, 150 bp sequencing was performed using v2 SBS chemistry on an Illumina MiSeq</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS2669244</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|tatumdmortimer@era">43</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>43</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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  <EXPERIMENT accession="SRX3371911" alias="SSC03">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3371911</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3203484">SSC03</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Staphylococcus saprophyticus SSC03</TITLE>
    <STUDY_REF accession="SRP092612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP092612</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA352403</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>modified Nextera protocol as decribed by Baym et al. with a reconditioning PCR with fresh primers and polymerase for an additional 5 PCR cycles,  two-step bead based size selection with target fragment size</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2669246">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2669246</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|tatumdmortimer@era">SSC03</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>SSC03</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3371912" alias="SSC02">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3371912</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3203484">SSC02</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Staphylococcus saprophyticus SSC02</TITLE>
    <STUDY_REF accession="SRP092612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP092612</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA352403</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>modified Nextera protocol as decribed by Baym et al. with a reconditioning PCR with fresh primers and polymerase for an additional 5 PCR cycles,  two-step bead based size selection with target fragment sizeof 650 bp, sequenced on an Illumina HiSeq 2500 (paired-end, 150 bp)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2669247">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2669247</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|tatumdmortimer@era">SSC02</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>SSC02</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3371913" alias="SSC05">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3371913</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3203484">SSC05</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Staphylococcus saprophyticus SSC05</TITLE>
    <STUDY_REF accession="SRP092612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP092612</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA352403</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>TruSeq Nano DNA LT Library Prep Kit, 200 ng of each sample was sheared using a Covaris M220 Ultrasonicator, sheared samples were size selected for an average insert size of 550 bp using Spri bead based size exclusion, Paired-end, 150 bp sequencing was performed using v2 SBS chemistry on an Illumina MiSeq</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2669248">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2669248</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|tatumdmortimer@era">SSC05</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>SSC05</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3371914" alias="SSC04">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3371914</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3203484">SSC04</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Staphylococcus saprophyticus SSC04</TITLE>
    <STUDY_REF accession="SRP092612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP092612</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA352403</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>of 650 bp, sequenced on an Illumina HiSeq 2500 (paired-end, 150 bp)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2669250">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2669250</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|tatumdmortimer@era">SSC04</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>SSC04</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3371915" alias="SSMast">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3371915</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3203484">SSMast</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS of Staphylococcus saprophyticus SSMast</TITLE>
    <STUDY_REF accession="SRP092612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP092612</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA352403</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>TruSeq Nano DNA LT Library Prep Kit, 200 ng of each sample was sheared using a Covaris M220 Ultrasonicator, sheared samples were size selected for an average insert size of 550 bp using Spri bead based size exclusion, Paired-end, 150 bp sequencing was performed using v2 SBS chemistry on an Illumina MiSeq</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2669249">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2669249</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|tatumdmortimer@era">SSMast</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>SSMast</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
