SRX3381834 GSM2849996 SRP124755 SRS2677379 GSM2849996 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302849996 GSM2849996 GEO Accession GSM2849996 SRX3381835 GSM2849997 SRP124755 SRS2677380 GSM2849997 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302849997 GSM2849997 GEO Accession GSM2849997 SRX3381836 GSM2849998 SRP124755 SRS2677381 GSM2849998 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302849998 GSM2849998 GEO Accession GSM2849998 SRX3381837 GSM2849999 SRP124755 SRS2677382 GSM2849999 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302849999 GSM2849999 GEO Accession GSM2849999 SRX3381838 GSM2850000 SRP124755 SRS2677383 GSM2850000 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850000 GSM2850000 GEO Accession GSM2850000 SRX3381839 GSM2850001 SRP124755 SRS2677386 GSM2850001 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850001 GSM2850001 GEO Accession GSM2850001 SRX3381840 GSM2850002 SRP124755 SRS2677384 GSM2850002 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850002 GSM2850002 GEO Accession GSM2850002 SRX3381841 GSM2850003 SRP124755 SRS2677385 GSM2850003 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850003 GSM2850003 GEO Accession GSM2850003 SRX3381842 GSM2850004 SRP124755 SRS2677387 GSM2850004 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850004 GSM2850004 GEO Accession GSM2850004 SRX3381843 GSM2850005 SRP124755 SRS2677388 GSM2850005 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850005 GSM2850005 GEO Accession GSM2850005 SRX3381844 GSM2850006 SRP124755 SRS2677389 GSM2850006 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850006 GSM2850006 GEO Accession GSM2850006 SRX3381845 GSM2850007 SRP124755 SRS2677390 GSM2850007 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850007 GSM2850007 GEO Accession GSM2850007 SRX3381846 GSM2850008 SRP124755 SRS2677392 GSM2850008 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850008 GSM2850008 GEO Accession GSM2850008 SRX3381847 GSM2850009 SRP124755 SRS2677391 GSM2850009 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850009 GSM2850009 GEO Accession GSM2850009 SRX3381848 GSM2850010 SRP124755 SRS2677393 GSM2850010 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850010 GSM2850010 GEO Accession GSM2850010 SRX3381849 GSM2850011 SRP124755 SRS2677394 GSM2850011 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850011 GSM2850011 GEO Accession GSM2850011 SRX3381850 GSM2850012 SRP124755 SRS2677395 GSM2850012 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850012 GSM2850012 GEO Accession GSM2850012 SRX3381851 GSM2850013 SRP124755 SRS2677396 GSM2850013 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850013 GSM2850013 GEO Accession GSM2850013 SRX3381852 GSM2850014 SRP124755 SRS2677397 GSM2850014 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850014 GSM2850014 GEO Accession GSM2850014 SRX3381853 GSM2850015 SRP124755 SRS2677398 GSM2850015 RNA-Seq TRANSCRIPTOMIC cDNA RNA was collected after 0h treatment (samples A-E), 3h treatment (samples F-N), or 6h treatment (samples O-T) in Trizol and processed according to the Ribopure bacteria kit (Ambion). DNased RNA was applied to the MegaClear column (Ambion) to remove small RNAs, followed by two rounds of eukaryotic mRNA and rRNA depletion with the MicrobEnrich kit (Ambion), and 1-2 rounds of prokaryotic rRNA depletion with MicrobExpresss kit (Ambion). RNA was ethanol precipitated, and tested for integrity by RNA fragment analysis. RNA was fragmented using RNAse III and cDNA was prepared as per the Ion Total RNA-seq Kit V2, and sequenced on an Ion Proton chip Ion Torrent Proton gds 302850015 GSM2850015 GEO Accession GSM2850015