<?xml version="1.0" encoding="UTF-8"?>
<ANALYSIS_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <ANALYSIS alias="PACBIO_FDA-CDC-AR_0014_METHYLOME" center_name="NISC" accession="SRZ175426">
    <IDENTIFIERS>
      <PRIMARY_ID>SRZ175426</PRIMARY_ID>
      <SUBMITTER_ID namespace="NISC">PACBIO_FDA-CDC-AR_0014_METHYLOME</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>PacBio SMRT Sequencing Methylome Analysis of Escherichia coli FDA-CDC-AR_0014</TITLE>
    <STUDY_REF accession="SRP068736">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP068736</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA292901</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESCRIPTION>PacBio SMRT Analysis base modification detection with motif finding</DESCRIPTION>
    <ANALYSIS_TYPE>
      <SEQUENCE_ANNOTATION>
        <PROCESSING>
          <PIPELINE>
            <PIPE_SECTION>
              <STEP_INDEX>1</STEP_INDEX>
              <PREV_STEP_INDEX>NULL</PREV_STEP_INDEX>
              <PROGRAM>PacBio SMRT Analysis</PROGRAM>
              <VERSION>2.3.0</VERSION>
            </PIPE_SECTION>
          </PIPELINE>
        </PROCESSING>
      </SEQUENCE_ANNOTATION>
    </ANALYSIS_TYPE>
    <TARGETS>
      <TARGET sra_object_type="SAMPLE" accession="SAMN04014855"/>
      <TARGET sra_object_type="EXPERIMENT" accession="SRX3380176"/>
    </TARGETS>
    <DATA_BLOCK>
      <FILES>
        <FILE filename="PRJNA292901_FDA-CDC-AR_0014_modifications.csv" filetype="csv" checksum_method="MD5" checksum="f8626ad7f7171039b016c4542d498b24"/>
        <FILE filename="PRJNA292901_FDA-CDC-AR_0014_motif_summary.csv" filetype="csv" checksum_method="MD5" checksum="61bae4a7d83d5ea9aa91dbb329c1ed55"/>
        <FILE filename="PRJNA292901_FDA-CDC-AR_0014_motifs.gff" filetype="gff" checksum_method="MD5" checksum="d9abf47783cfc4137cecbfb83bd40fef"/>
      </FILES>
    </DATA_BLOCK>
  </ANALYSIS>
</ANALYSIS_SET>
