RNAseq of synthetic nucleocapsid: I53-50-v1 encapsulated RNA replicate 2

SRX3407639 I53-50-v1_encapsulated_rep2 RNAseq of synthetic nucleocapsid: I53-50-v1 encapsulated RNA replicate 2 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700679 SAMN07998536 I53-50-v1_encapsulated_rep2 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407640 I53-50-v1_encapsulated_rep1 RNAseq of synthetic nucleocapsid: I53-50-v1 encapsulated RNA replicate 1 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700679 SAMN07998536 I53-50-v1_encapsulated_rep1 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407641 I53-50-v4_cells_rep2 RNAseq of synthetic nucleocapsid: I53-50-v4 producer cells replicate 2 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700680 SAMN07998539 I53-50-v4_cells_rep2 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407642 I53-50-v4_cells_rep1 RNAseq of synthetic nucleocapsid: I53-50-v4 producer cells replicate 1 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700680 SAMN07998539 I53-50-v4_cells_rep1 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407643 I53-50-v1_cells_rep2 RNAseq of synthetic nucleocapsid: I53-50-v1 producer cells replicate 2 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700679 SAMN07998536 I53-50-v1_cells_rep2 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407644 I53-50-v1_cells_rep1 RNAseq of synthetic nucleocapsid: I53-50-v1 producer cells replicate 1 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700679 SAMN07998536 I53-50-v1_cells_rep1 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407645 I53-50-v0_cells_rep2 RNAseq of synthetic nucleocapsid: I53-50-v0 producer cells replicate 2 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700681 SAMN07998535 I53-50-v0_cells_rep2 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407646 I53-50-v0_cells_rep1 RNAseq of synthetic nucleocapsid: I53-50-v0 producer cells replicate 1 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700681 SAMN07998535 I53-50-v0_cells_rep1 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407647 I53-50-v4_encapsulated_rep2 RNAseq of synthetic nucleocapsid: I53-50-v4 encapsulated RNA replicate 2 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700680 SAMN07998539 I53-50-v4_encapsulated_rep2 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407648 I53-50-v4_encapsulated_rep1 RNAseq of synthetic nucleocapsid: I53-50-v4 encapsulated RNA replicate 1 SRP125265 PRJNA417493 Standard protocols with NEBNextｨ Ultraｪ RNA Library Prep Kit for Illuminaｨ SRS2700680 SAMN07998539 I53-50-v4_encapsulated_rep1 RNA-Seq TRANSCRIPTOMIC cDNA NextSeq 500 SRX3407649 I53-50-v3_hydrophilic_peptide_mouse_rep2 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with hydrophilic peptides for increased circulation time replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_hydrophilic_peptide_mouse_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407650 I53-50-v2_pore_opt_cells_rep2 RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-v2 optimal pore charge replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_pore_opt_cells_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407651 I53-50-v3_hydrophilic_peptide_mouse_rep4 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with hydrophilic peptides for increased circulation time replicate 4 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_hydrophilic_peptide_mouse_rep4 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407652 I53-50-v2_DMS_window1-2_blood_rep1 RNAseq of synthetic nucleocapsid: heparinized murine blood selection for deep mutational scanning of I53-50-v2 window 1-2 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window1-2_blood_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407653 I53-50-v3_surface_cells RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-v3 with exterior surface mutations for increased circulation time SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_surface_cells RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407654 I53-50-v3_surface_mouse_rep1 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with exterior surface mutations for increased circulation time replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_surface_mouse_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407655 I53-50-v3_surface_mouse_rep2 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with exterior surface mutations for increased circulation time replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_surface_mouse_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407656 I53-50-v2_pore_opt_cells_rep1 RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-v2 optimal pore charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_pore_opt_cells_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407657 I53-50-v3_surface_mouse_rep4 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with exterior surface mutations for increased circulation time replicate 4 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_surface_mouse_rep4 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407658 I53-50-v3_surface_mouse_rep5 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with exterior surface mutations for increased circulation time replicate 5 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_surface_mouse_rep5 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407659 I53-50-v3_surface_mouse_rep6 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with exterior surface mutations for increased circulation time replicate 6 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_surface_mouse_rep6 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407660 I53-50-v2_pore_opt_RNase_rep2 RNAseq of synthetic nucleocapsid: encapsulated RNA for evolution of I53-50-v2 optimal pore charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_pore_opt_RNase_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407661 I53-50-v2_DMS_window3-4_RNase_rep1 RNAseq of synthetic nucleocapsid: RNAse selection for deep mutational scanning of I53-50-v2 window 3-4 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window3-4_RNase_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407662 I53-50-v2_DMS_window3-4_RNase_rep2 RNAseq of synthetic nucleocapsid: RNAse selection for deep mutational scanning of I53-50-v2 window 3-4 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window3-4_RNase_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407663 I53-50-v2_DMS_window1-2_RNase_rep1 RNAseq of synthetic nucleocapsid: RNAse selection for deep mutational scanning of I53-50-v2 window 1-2 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window1-2_RNase_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407664 I53-50-v2_DMS_window1-2_RNase_rep2 RNAseq of synthetic nucleocapsid: RNAse selection for deep mutational scanning of I53-50-v2 window 1-2 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window1-2_RNase_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407665 I53-50-v2_DMS_window5-7_cells_rep1 RNAseq of synthetic nucleocapsid: cells for deep mutational scanning of I53-50-v2 window 5-7 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window5-7_cells_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407666 I53-50-v2_DMS_window5-7_cells_rep2 RNAseq of synthetic nucleocapsid: cells for deep mutational scanning of I53-50-v2 window 5-7 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window5-7_cells_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407667 I53-50-v2_DMS_window3-4_cells_rep1 RNAseq of synthetic nucleocapsid: cells for deep mutational scanning of I53-50-v2 window 3-4 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window3-4_cells_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407668 I53-50-v2_DMS_window3-4_cells_rep2 RNAseq of synthetic nucleocapsid: cells for deep mutational scanning of I53-50-v2 window 3-4 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window3-4_cells_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407669 I53-50-v2_DMS_window1-2_blood_rep2 RNAseq of synthetic nucleocapsid: heparinized murine blood selection for deep mutational scanning of I53-50-v2 window 1-2 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window1-2_blood_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407670 I53-50-v2_DMS_window5-7_RNase_rep1 RNAseq of synthetic nucleocapsid: RNAse selection for deep mutational scanning of I53-50-v2 window 5-7 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window5-7_RNase_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407671 I53-50-v2_DMS_window5-7_RNase_rep2 RNAseq of synthetic nucleocapsid: RNAse selection for deep mutational scanning of I53-50-v2 window 5-7 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window5-7_RNase_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407672 I53-50-v2_DMS_window5-7_blood_rep2 RNAseq of synthetic nucleocapsid: heparinized murine blood selection for deep mutational scanning of I53-50-v2 window 5-7 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window5-7_blood_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407673 I53-50-v3_hydrophilic_peptide_mouse_rep3 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with hydrophilic peptides for increased circulation time replicate 3 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_hydrophilic_peptide_mouse_rep3 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407674 I53-50-v2_DMS_window5-7_blood_rep1 RNAseq of synthetic nucleocapsid: heparinized murine blood selection for deep mutational scanning of I53-50-v2 window 5-7 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window5-7_blood_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407675 I53-50-v3_hydrophilic_peptide_mouse_rep5 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with hydrophilic peptides for increased circulation time replicate 5 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_hydrophilic_peptide_mouse_rep5 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407676 I53-50-v2_pore_opt_RNase_rep1 RNAseq of synthetic nucleocapsid: encapsulated RNA for evolution of I53-50-v2 optimal pore charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_pore_opt_RNase_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407677 I53-50-v3_surface_mouse_rep3 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with exterior surface mutations for increased circulation time replicate 3 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_surface_mouse_rep3 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407678 I53-50-v1_charge_opt_encapsulated_rep2 RNAseq of synthetic nucleocapsid: encapsulated RNA for evolution of I53-50-v1 optimal interior charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700679 SAMN07998536 I53-50-v1_charge_opt_encapsulated_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407679 I53-50-v1_charge_opt_encapsulated_rep1 RNAseq of synthetic nucleocapsid: encapsulated RNA for evolution of I53-50-v1 optimal interior charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700679 SAMN07998536 I53-50-v1_charge_opt_encapsulated_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407680 I53-50-v1_charge_opt_cells_rep2 RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-v1 optimal interior charge replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700679 SAMN07998536 I53-50-v1_charge_opt_cells_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407681 I53-50-v1_charge_opt_cells_rep1 RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-v1 optimal interior charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700679 SAMN07998536 I53-50-v1_charge_opt_cells_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407682 I53-50-Btat_charge_opt_encapsulated_rep2 RNAseq of synthetic nucleocapsid: encapsulated RNA for evolution of I53-50-Btat optimal interior charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700684 SAMN07998540 I53-50-Btat_charge_opt_encapsulated_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407683 I53-50-Btat_charge_opt_encapsulated_rep1 RNAseq of synthetic nucleocapsid: encapsulated RNA for evolution of I53-50-Btat optimal interior charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700684 SAMN07998540 I53-50-Btat_charge_opt_encapsulated_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407684 I53-50-Btat_charge_opt_cells_rep2 RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-Btat optimal interior charge replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700684 SAMN07998540 I53-50-Btat_charge_opt_cells_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407685 I53-50-Btat_charge_opt_cells_rep1 RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-Btat optimal interior charge replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700684 SAMN07998540 I53-50-Btat_charge_opt_cells_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407686 I53-50-v2_DMS_window1-2_cells_rep2 RNAseq of synthetic nucleocapsid: cells for deep mutational scanning of I53-50-v2 window 1-2 replicate 2 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window1-2_cells_rep2 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407687 I53-50-v2_DMS_window1-2_cells_rep1 RNAseq of synthetic nucleocapsid: cells for deep mutational scanning of I53-50-v2 window 1-2 replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700683 SAMN07998537 I53-50-v2_DMS_window1-2_cells_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407688 I53-50-v3_hydrophilic_peptide_mouse_rep1 RNAseq of synthetic nucleocapsid: mouse selection for evolution of I53-50-v3 with hydrophilic peptides for increased circulation time replicate 1 SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_hydrophilic_peptide_mouse_rep1 RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq SRX3407689 I53-50-v3_hydrophilic_peptide_cells RNAseq of synthetic nucleocapsid: na夫e cells for evolution of I53-50-v3 with hydrophilic peptides for increased circulation time SRP125265 PRJNA417493 Standard RT-PCR with primers specific for nucleocapsid genome SRS2700682 SAMN07998538 I53-50-v3_hydrophilic_peptide_cells RNA-Seq VIRAL RNA RT-PCR Illumina MiSeq