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    <TITLE>aclimmatation _day_6</TITLE>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <PRIMARY_ID>SRX3427329</PRIMARY_ID>
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    <TITLE>aclimmatation _day_6</TITLE>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <PRIMARY_ID>SRX3427330</PRIMARY_ID>
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    <TITLE>aclimmatation _day_4</TITLE>
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        <PRIMARY_ID>SRP125772</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <PRIMARY_ID>SRX3427331</PRIMARY_ID>
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    <TITLE>aclimmatation _day_4</TITLE>
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        <PRIMARY_ID>SRP125772</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718838">
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    <TITLE>aclimmatation _day_4</TITLE>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <PRIMARY_ID>SRX3427333</PRIMARY_ID>
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    <TITLE>seed sludge_day_0</TITLE>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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    <TITLE>seed sludge_day_0</TITLE>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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    <TITLE>fluffy granules_day_39</TITLE>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427337</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T3.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>aclimmatation _day_8</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718840">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718840</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040950</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T3.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427338" alias="T2.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427338</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T2.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>aclimmatation _day_6</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718837">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718837</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040949</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T2.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427339" alias="T19.1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427339</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T19.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>destabilization_day_46</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718842">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718842</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040966</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T19.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427340" alias="T18.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427340</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T18.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>fluffy granules_day_43</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718843">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718843</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040965</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T18.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427341" alias="T18.2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427341</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T18.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>fluffy granules_day_43</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718843">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718843</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040965</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T18.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
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    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427342</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T18.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>fluffy granules_day_43</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718843">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718843</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040965</EXTERNAL_ID>
        </IDENTIFIERS>
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        <LIBRARY_NAME>T18.1</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427343</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T17.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>fluffy granules_day_41</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718844">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718844</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040964</EXTERNAL_ID>
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        <LIBRARY_NAME>T17.3</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427344</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T17.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>fluffy granules_day_41</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718844">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718844</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040964</EXTERNAL_ID>
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        <LIBRARY_NAME>T17.2</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427345</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T17.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>fluffy granules_day_41</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718844">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718844</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040964</EXTERNAL_ID>
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        <LIBRARY_NAME>T17.1</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427346</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T16.2</SUBMITTER_ID>
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    <TITLE>fluffy granules_day_39</TITLE>
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        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <PRIMARY_ID>SRX3427347</PRIMARY_ID>
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    <TITLE>destabilization_day_46</TITLE>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <PRIMARY_ID>SRX3427348</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427349</PRIMARY_ID>
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    <TITLE>aclimmatation _day_12</TITLE>
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        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <PRIMARY_ID>SRX3427351</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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    <TITLE>start of granulation_day_13</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718846">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718846</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040952</EXTERNAL_ID>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427356</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T4.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>aclimmatation _day_12</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718845">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718845</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040951</EXTERNAL_ID>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427357</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T6.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_15</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718847">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718847</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040953</EXTERNAL_ID>
        </IDENTIFIERS>
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        <LIBRARY_NAME>T6.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
        </LIBRARY_LAYOUT>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427358</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T6.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_15</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718847">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718847</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040953</EXTERNAL_ID>
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          <PAIRED/>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427359</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T13.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_32</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718848">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718848</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040960</EXTERNAL_ID>
        </IDENTIFIERS>
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        <LIBRARY_NAME>T13.1</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427360</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T12.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_29</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718849">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718849</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040959</EXTERNAL_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T12.3</LIBRARY_NAME>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427361</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T11.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_27</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718850">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718850</PRIMARY_ID>
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        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427362</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T11.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_27</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718850">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718850</PRIMARY_ID>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427363</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T11.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_27</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718850">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718850</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040958</EXTERNAL_ID>
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        <LIBRARY_NAME>T11.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED/>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
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    </PLATFORM>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427364</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T12.2</SUBMITTER_ID>
    </IDENTIFIERS>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718841">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718841</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040963</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T16.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427374" alias="T10.2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427374</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T10.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_25</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718853">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718853</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040957</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T10.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427375" alias="T20.1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427375</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T20.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>destabilization_day_50</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718854">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718854</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040967</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T20.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427376" alias="T20.2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427376</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T20.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>destabilization_day_50</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718854">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718854</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040967</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T20.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427377" alias="T10.1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427377</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T10.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_25</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718853">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718853</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040957</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T10.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427378" alias="T8.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427378</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T8.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_20</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718855">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718855</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040955</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T8.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427379" alias="T9.1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427379</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T9.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_22</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718856">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718856</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040956</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T9.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427380</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T8.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_20</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718855">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718855</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040955</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T8.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427381</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T8.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_20</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718855">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718855</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040955</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T8.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427382" alias="T7.2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427382</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T7.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_18</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718857">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718857</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040954</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T7.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427383" alias="T7.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427383</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T7.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_18</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718857">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718857</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040954</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T7.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427384" alias="T6.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427384</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T6.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_15</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718847">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718847</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040953</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T6.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427385" alias="T7.1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427385</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T7.1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_18</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718857">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718857</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040954</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T7.1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427386" alias="T10.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427386</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T10.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_25</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718853">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718853</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040957</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T10.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427387" alias="T9.2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427387</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T9.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_22</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718856">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718856</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040956</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T9.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427388" alias="T9.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427388</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T9.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>start of granulation_day_22</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718856">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718856</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040956</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T9.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427389" alias="T14.2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427389</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T14.2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>mature granules_day_34</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718851">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718851</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040961</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T14.2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX3427390" alias="T20.3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3427390</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB3234390">T20.3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>destabilization_day_50</TITLE>
    <STUDY_REF accession="SRP125772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP125772</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA419221</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Amplicon libraries of V6ÐV8 regions of 16S rRNA genes were obtained using primers 341F (5Õ-CCTACGGGIGGCWGCAG-3Õ) and 805R                                                                    (5Õ-GACTACHVGGGTATCTAATCC-3Õ) (Al Kharusi et al. 2016) containing the Illumina-specific MID barcodes. The PCR mixture contained 10 pM of each primer, 200 ?M of each dNTP, 0.7 U DNA polymerase (Thermo Fisher Scientific, Hudson, NH, USA), 1 ? reaction buffer, 2 mM MgCl2 and 10 ng metagenomic DNA in a reaction volume of 20 ?L. Amplification was done with the PCR Thermal Cycler Multigene Optimax (Labnet, Edison, NJ, USA) using the following steps: (1) initial denaturation at 94 ¡C for 10 min; (2) 25 cycles of further denaturation at 94 ¡C for 45 s, annealing at 53 ¡C for 45 s, and extension at 72 ¡C for 1 min; (3) concluding extension at 72 ¡C for 10 min. The DNA from each sample was amplified three times, pooled, purified using the Fast Geneª Gel/PCR Extraction Kit (Nippon Genetics Europe GmbH, Japan), assessed for integrity by agarose (1%) gel electrophoresis and quantified with a Nanodropª 3300 Fluorospectrometer (Thermo Fisher Scientific Inc, Waltham, MA, USA.) using Quant-iTTM PicoGreenR dsDNA (Invitrogen, Carlsbad, USA). Equal amounts of the purified 16S rRNA gene amplicons were sequenced at Macrogen (Macrogen, Inc., Seoul, Korea), using paired-end (2?_?300 nt) Illumina MiSeq sequencing system (Illumina, USA).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2718854">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2718854</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08040967</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>T20.3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
