SRS2719192 SAMN08104452 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TCGTGCGTGTTG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTCGTGCGTGTTGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 607 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc156 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719193 SAMN08104453 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GTTATCGCATGG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTTATCGCATGGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 608 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc157 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719194 SAMN08104446 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode ACGCGAACTAAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATACGCGAACTAATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 601 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc150 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719195 SAMN08104444 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GTAGAGGTAGAG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTAGAGGTAGAGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 586 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc138 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719196 SAMN08104447 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode AGCTATGTATGG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAGCTATGTATGGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 602 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc151 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719197 SAMN08104450 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode CGTACTCTCGAG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCGTACTCTCGAGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 605 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc154 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719198 SAMN08104451 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TCAGTTCTCGTT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTCAGTTCTCGTTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 606 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc155 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719199 SAMN08104445 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CGTGATCCGCTA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCGTGATCCGCTAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 588 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc139 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719200 SAMN08104448 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode ACGGGTCATCAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATACGGGTCATCATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 603 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc152 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719201 SAMN08104449 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GAAACATCCCAC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGAAACATCCCACAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 604 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc153 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719202 SAMN08104503 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GGCTGCATACTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGGCTGCATACTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 8 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3570 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719203 SAMN08104501 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GCTAGTTATGGA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCTAGTTATGGAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 6 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3550 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719204 SAMN08104502 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CAGATTAACCAG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCAGATTAACCAGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 7 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3560 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719205 SAMN08104500 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode TTATGGTACGGA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTTATGGTACGGAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 5 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3540 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719206 SAMN08104497 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATATGACCCAGC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATATGACCCAGCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 2 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3510 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719207 SAMN08104498 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CTCTATTCCACC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCTCTATTCCACCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 3 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3520 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719208 SAMN08104499 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATTGAGTGAGTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATTGAGTGAGTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 4 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3530 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719209 SAMN08104496 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CTCTGCCTAATT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCTCTGCCTAATTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 1 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3500 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719210 SAMN08104495 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GTTCACGCCCAA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTTCACGCCCAAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 90 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc371 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719211 SAMN08104494 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode ACCTGTCCTTTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATACCTGTCCTTTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 89 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc370 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719212 SAMN08104424 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode TATCTATCCTGC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTATCTATCCTGCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 491 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc118 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719213 SAMN08104426 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATCTACCGAAGC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATCTACCGAAGCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 565 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc104 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719214 SAMN08104425 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode TTGCCAAGAGTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTTGCCAAGAGTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 492 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc119 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719215 SAMN08104427 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GCAATTAGGTAC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCAATTAGGTACAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 566 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc121 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719216 SAMN08104430 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CCTGCGAAGTAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCCTGCGAAGTATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 569 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc124 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719217 SAMN08104428 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CATACCGTGAGT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCATACCGTGAGTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 567 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc122 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719218 SAMN08104429 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATGTGTGTAGAC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATGTGTGTAGACAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 568 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc123 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719219 SAMN08104431 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode TTCTCTCGACAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTTCTCTCGACATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 570 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc125 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719220 SAMN08104433 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GTTAAGCTGACC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTTAAGCTGACCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 572 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc127 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719221 SAMN08104432 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GCTCTCCGTAGA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCTCTCCGTAGAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 571 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc126 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719222 SAMN08104504 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode TTGGTAAAGTGC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTTGGTAAAGTGCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 9 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3580 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719223 SAMN08104505 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode AAGTGGCTATCC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAAGTGGCTATCCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 10 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-03-07 collection_date 2016-03-14 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40 project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc3590 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719224 SAMN08104479 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CTAGCTATGGAC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCTAGCTATGGACAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 48 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc347 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719225 SAMN08104478 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GCTGTGATTCGA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCTGTGATTCGAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 47 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc346 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719226 SAMN08104481 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ACCTGGGAATAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATACCTGGGAATATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 50 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc349 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719227 SAMN08104480 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CTTGACGAGGTT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCTTGACGAGGTTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 49 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc348 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719228 SAMN08104475 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CCACATTGGGTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCCACATTGGGTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 44 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc343 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719229 SAMN08104474 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode TATGAACGTCCG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTATGAACGTCCGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 43 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc342 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719230 SAMN08104477 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode AAGTCACACACA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAAGTCACACACAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 46 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc345 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719231 SAMN08104476 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode TCAGTCAGATGA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTCAGTCAGATGAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 45 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc344 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719232 SAMN08104483 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CTCTATTCCACC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCTCTATTCCACCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 53 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc352 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719233 SAMN08104482 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATATGACCCAGC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATATGACCCAGCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 52 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc351 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719234 SAMN08104490 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GCCAAGGATAGG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCCAAGGATAGGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 84 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc365 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719235 SAMN08104491 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode CGCCACGTGTAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCGCCACGTGTATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 85 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc366 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719236 SAMN08104488 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TTGGGCCACATA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTTGGGCCACATAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 82 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc363 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719237 SAMN08104489 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode CACACAAAGTCA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCACACAAAGTCAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 83 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc364 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719238 SAMN08104486 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TCGATTGGCCGT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTCGATTGGCCGTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 80 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc361 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719239 SAMN08104487 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GCATTACTGGAC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCATTACTGGACAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 81 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc362 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719240 SAMN08104484 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATTGAGTGAGTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATTGAGTGAGTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 54 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-29 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc353 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719241 SAMN08104485 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode AACCGATGTACC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAACCGATGTACCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 79 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc360 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719242 SAMN08104493 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GTTCCTCCATTA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTTCCTCCATTAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 88 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc369 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719243 SAMN08104492 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GCAACCGATTGT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCAACCGATTGTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 86 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-05-06 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc367 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719244 SAMN08104456 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode AGTGTTTCGGAC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAGTGTTTCGGACAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 611 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc160 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719245 SAMN08104455 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GTAAATTCAGGC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTAAATTCAGGCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 610 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc159 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719246 SAMN08104454 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode GATCACGAGAGG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGATCACGAGAGGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 609 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc158 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719247 SAMN08104461 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TGCCGTATGCCA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTGCCGTATGCCAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 617 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc165 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719248 SAMN08104460 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TTAACCTTCCTG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTTAACCTTCCTGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 615 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc164 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719249 SAMN08104459 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode CACCTTACCTTA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCACCTTACCTTAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 614 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc163 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719250 SAMN08104458 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TGGCAAATCTAG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTGGCAAATCTAGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 613 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc162 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719251 SAMN08104463 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode CGCTACAACTCG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCGCTACAACTCGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 620 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc167 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719252 SAMN08104462 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode CGTGACAATAGT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCGTGACAATAGTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 619 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc166 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719253 SAMN08104416 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode TCATGCTCCATT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTCATGCTCCATTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 483 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc110 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719254 SAMN08104417 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode AGCTGTCAAGCT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAGCTGTCAAGCTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 484 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc111 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719255 SAMN08104414 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode GCACACCTGATA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCACACCTGATAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 481 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc108 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719256 SAMN08104415 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode GCGACAATTACA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCGACAATTACAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 482 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc109 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719257 SAMN08104420 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode CGTGCTTAGGCT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCGTGCTTAGGCTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 487 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc114 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719258 SAMN08104421 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode TACCGAAGGTAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTACCGAAGGTATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 488 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc115 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719259 SAMN08104418 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode GAGAGCAACAGA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGAGAGCAACAGAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 485 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc112 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719260 SAMN08104419 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode TACTCGGGAACT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTACTCGGGAACTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 486 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc113 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719261 SAMN08104423 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode GTATTTCGGACG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTATTTCGGACGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 490 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc117 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719262 SAMN08104422 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode CACTCATCATTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCACTCATCATTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 489 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-05 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated NA project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc116 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719263 SAMN08104472 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode AGGAACCAGACG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAGGAACCAGACGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 5 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-22 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc340 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719264 SAMN08104473 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode TAATGCCCAGGT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTAATGCCCAGGTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 6 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-22 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc341 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719265 SAMN08104468 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode ATAGGCTGTAGT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATAGGCTGTAGTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 1 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-22 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc336 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719266 SAMN08104469 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode TGTGTAGCCATG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTGTGTAGCCATGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 2 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-22 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc337 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719267 SAMN08104470 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode AAGGGCGCTGAA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAAGGGCGCTGAAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 3 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-22 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc338 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719268 SAMN08104471 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 0 golay_barcode GTTTCCGTGGTG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGTTTCCGTGGTGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 4 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2016-04-22 collection_date 2016-04-22 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used NA virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-19-16 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc339 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719269 SAMN08104464 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TTAAGACAGTCG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTTAAGACAGTCGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 621 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc168 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719270 SAMN08104465 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TCTGCACTGAGC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTCTGCACTGAGCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 622 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc169 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719271 SAMN08104467 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode TGGGTCCCACAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTGGGTCCCACATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 624 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc171 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719272 SAMN08104443 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode CAGAAATGTGTC linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCAGAAATGTGTCAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 585 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc137 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719273 SAMN08104466 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode CGCAGATTAGTA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATCGCAGATTAGTAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 623 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc170 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719274 SAMN08104442 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GATGTGGTGTTA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGATGTGGTGTTAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 584 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc136 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719275 SAMN08104435 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GACATTGTCACG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGACATTGTCACGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 575 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc129 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719276 SAMN08104434 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATGCCATGCCGT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATGCCATGCCGTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 573 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc128 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719277 SAMN08104437 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ATCAGTACTAGG linker_primer_sequence CAAGCAGAAGACGGCATACGAGATATCAGTACTAGGAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 577 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc131 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719278 SAMN08104436 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode GCCAACAACCAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATGCCAACAACCATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 576 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc130 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719279 SAMN08104439 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode ACCCAAGCGTTA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATACCCAAGCGTTAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 579 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc133 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719280 SAMN08104441 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode AGCAACATTGCA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATAGCAACATTGCAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 583 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc135 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719281 SAMN08104440 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode TGCAGCAAGATT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTGCAGCAAGATTAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 580 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc134 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719284 SAMN08104438 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 7 golay_barcode TCCTCGAGCGAT linker_primer_sequence CAAGCAGAAGACGGCATACGAGATTCCTCGAGCGATAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 578 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-12 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used HALo virus_full_name InfluenzaA.VietNam.1203.04 virus_Inoculated_pfu 40 amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc132 lat_lon not applicable BioSampleModel Metagenome or environmental SRS2719294 SAMN08104457 410661 mouse gut metagenome Influenza_modified_fecal_microbiome_of_mice bioproject 419862 PRJNA419862 day 14 golay_barcode ACACGCGGTTTA linker_primer_sequence CAAGCAGAAGACGGCATACGAGATACACGCGGTTTAAGTCAGTCAGCCGGACTACHVGGGTWTCTAAT sampling_id 612 target_gene 16SrRNA host Mus_musculus_C57.Bl.6_Jackson_lab vendor CharlesRiver isolation_source feces infection_date 2015-05-05 collection_date 2015-05-19 diet Standard_Rodent_Diet age_at_arrival 8_weeks gender female days_housed_before_infection 7 virus_used PBS virus_full_name NA virus_Inoculated_pfu NA amount_Inoculated 40ul project_ID GE-45-15 geo_loc_name not applicable location P2_SPF_SalleB_Animal_facility_CMU_University_of_Geneva source_material_id 806rcbc161 lat_lon not applicable BioSampleModel Metagenome or environmental