SRX3450232 Pm449_Stationary_2 SRP126240 bp0 Pm. minimum isolate Pm449 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739202 Pm449 Pm449_Stationary_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450233 Pm449_Stationary_1 SRP126240 bp0 Pm. minimum isolate Pm449 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739202 Pm449 Pm449_Stationary_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450234 Pm449_Stationary_3 SRP126240 bp0 Pm. minimum isolate Pm449 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739202 Pm449 Pm449_Stationary_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450235 Pm1119_gDNA_pacbio8 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio8 WGS GENOMIC RANDOM PacBio RS II SRX3450236 Pm1119_gDNA_pacbio9 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio9 WGS GENOMIC RANDOM PacBio RS II SRX3450237 Pm1119_gDNA_pacbio10 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio10 WGS GENOMIC RANDOM PacBio RS II SRX3450238 Pm1119_gDNA_pacbio11 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio11 WGS GENOMIC RANDOM PacBio RS II SRX3450239 Pm1119_gDNA_Illumina SRP126240 bp0 Libraries (KAPA) were prepared with the randomly-fragmented genomic DNA extracted from previously frozen and ground mycelia. Paired-end, 150-bp reads were sequenced on an Illumina HiSeq2500 (DNA Technologies Core Facility, University of California). SRS2739203 Pm1119 Pm1119_gDNA_Illumina WGS GENOMIC RANDOM Illumina HiSeq 2500 SRX3450240 Pm1119_Rotating_1 SRP126240 bp0 Pm. minimum isolate Pm1119 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739203 Pm1119 Pm1119_Rotating_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450241 Pm1119_Rotating_2 SRP126240 bp0 Pm. minimum isolate Pm1119 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739203 Pm1119 Pm1119_Rotating_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450242 Pm1119_Rotating_3 SRP126240 bp0 Pm. minimum isolate Pm1119 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739203 Pm1119 Pm1119_Rotating_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450243 Pm1119_Stationary_1 SRP126240 bp0 Pm. minimum isolate Pm1119 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739203 Pm1119 Pm1119_Stationary_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450244 Pm1119_Stationary_2 SRP126240 bp0 Pm. minimum isolate Pm1119 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739203 Pm1119 Pm1119_Stationary_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450245 UCR-PA7_Rotating_2 SRP126240 bp0 Pm. minimum isolate UCR-PA7 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739204 UCR-PA7 UCR-PA7_Rotating_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450246 UCR-PA7_Rotating_1 SRP126240 bp0 Pm. minimum isolate UCR-PA7 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739204 UCR-PA7 UCR-PA7_Rotating_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450247 UCR-PA7_Stationary_1 SRP126240 bp0 Pm. minimum isolate UCR-PA7 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739204 UCR-PA7 UCR-PA7_Stationary_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450248 UCR-PA7_Rotating_3 SRP126240 bp0 Pm. minimum isolate UCR-PA7 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739204 UCR-PA7 UCR-PA7_Rotating_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450249 UCR-PA7_Stationary_3 SRP126240 bp0 Pm. minimum isolate UCR-PA7 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739204 UCR-PA7 UCR-PA7_Stationary_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450250 UCR-PA7_Stationary_2 SRP126240 bp0 Pm. minimum isolate UCR-PA7 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739204 UCR-PA7 UCR-PA7_Stationary_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450251 Pm1118_Rotating_1 SRP126240 bp0 Pm. minimum isolate Pm1118 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739205 Pm1118 Pm1118_Rotating_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450252 Pm1118_gDNA_Illumina SRP126240 bp0 Libraries (KAPA) were prepared with the randomly-fragmented genomic DNA extracted from previously frozen and ground mycelia. Paired-end, 150-bp reads were sequenced on an Illumina HiSeq2500 (DNA Technologies Core Facility, University of California). SRS2739205 Pm1118 Pm1118_gDNA_Illumina WGS GENOMIC RANDOM Illumina HiSeq 2500 SRX3450253 Pm1118_Rotating_3 SRP126240 bp0 Pm. minimum isolate Pm1118 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739205 Pm1118 Pm1118_Rotating_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450254 Pm1118_Rotating_2 SRP126240 bp0 Pm. minimum isolate Pm1118 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739205 Pm1118 Pm1118_Rotating_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450255 Pm1119_gDNA_pacbio7 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio7 WGS GENOMIC RANDOM PacBio RS II SRX3450256 Pm1119_gDNA_pacbio6 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio6 WGS GENOMIC RANDOM PacBio RS II SRX3450257 Pm449_Rotating_3 SRP126240 bp0 Pm. minimum isolate Pm449 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739202 Pm449 Pm449_Rotating_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450258 Pm449_Rotating_2 SRP126240 bp0 Pm. minimum isolate Pm449 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739202 Pm449 Pm449_Rotating_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450259 Pm449_Rotating_1 SRP126240 bp0 Pm. minimum isolate Pm449 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C at 150 rpm in ambient light during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739202 Pm449 Pm449_Rotating_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450260 Pm449_gDNA_Illumina SRP126240 bp0 Libraries (KAPA) were prepared with the randomly-fragmented genomic DNA extracted from previously frozen and ground mycelia. Paired-end, 150-bp reads were sequenced on an Illumina HiSeq2500 (DNA Technologies Core Facility, University of California). SRS2739202 Pm449 Pm449_gDNA_Illumina WGS GENOMIC RANDOM Illumina HiSeq 2500 SRX3450261 Pm448_gDNA_Illumina SRP126240 bp0 Libraries (KAPA) were prepared with the randomly-fragmented genomic DNA extracted from previously frozen and ground mycelia. Paired-end, 150-bp reads were sequenced on an Illumina HiSeq2500 (DNA Technologies Core Facility, University of California). SRS2739206 Pm448 Pm448_gDNA_Illumina WGS GENOMIC RANDOM Illumina HiSeq 2500 SRX3450262 Pm1119_Stationary_3 SRP126240 bp0 Pm. minimum isolate Pm1119 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739203 Pm1119 Pm1119_Stationary_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450263 Pm1118_Stationary_2 SRP126240 bp0 Pm. minimum isolate Pm1118 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739205 Pm1118 Pm1118_Stationary_2 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450264 Pm1118_Stationary_1 SRP126240 bp0 Pm. minimum isolate Pm1118 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739205 Pm1118 Pm1118_Stationary_1 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450265 Pm1119_gDNA_pacbio1 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio1 WGS GENOMIC RANDOM PacBio RS II SRX3450266 Pm1118_Stationary_3 SRP126240 bp0 Pm. minimum isolate Pm1118 was grown in Czapek broth (pH 5.7) amended with 0.1% yeast extract and 0.1% malt extract at 25°C in darkness during 28 days. Fungal suspensions were vacuum-filtered through 1.6 µm glass microfiber filters (Whatman, Maidstone, UK). Total RNA was extracted from frozen ground mycelia using TRIzol reagent (Ambion, Austin, TX, USA) following the manufacturer's protocol. RNA-seq libraries were prepared using the Illumina TruSeq RNA sample preparation kit v.2 (Illumina, San Diego, CA, USA) and then sequenced on an Illumina HiSeq3000 sequencer (DNA Technologies Core Facility, University of California) in single-end 50-bp mode. SRS2739205 Pm1118 Pm1118_Stationary_3 RNA-Seq TRANSCRIPTOMIC PolyA Illumina HiSeq 3000 SRX3450267 Pm1119_gDNA_pacbio3 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio3 WGS GENOMIC RANDOM PacBio RS II SRX3450268 Pm1119_gDNA_pacbio2 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio2 WGS GENOMIC RANDOM PacBio RS II SRX3450269 Pm1119_gDNA_pacbio5 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio5 WGS GENOMIC RANDOM PacBio RS II SRX3450270 Pm1119_gDNA_pacbio4 SRP126240 bp0 Around 15 mg of high-quality genomic DNA was sheared using a Megaruptor (Diagenode, Denville, NJ, USA). After shearing, fragmented DNA was processed using a SMRTbell Template Prep Kit 1.0 (Pacific Biosciences, Menlo Park, CA, USA). Libraries were size selected at 12–50-kb cut-offs using a Blue Pippin (Sage Science, Beverly, MA, USA), submitted to a final DNA repair treatment (SMRTbell Damage Repair Kit, Pacific Biosciences) and then sequenced using a PacBio RS II platform (DNA Technologies Core Facility, University of California, Davis, CA, USA). SRS2739203 Pm1119 Pm1119_gDNA_pacbio4 WGS GENOMIC RANDOM PacBio RS II