<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="experiment_68274872" center_name="BaseSpace" accession="SRX3474987">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX3474987</PRIMARY_ID>
      <SUBMITTER_ID namespace="BaseSpace">experiment_68274872</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>The ubiquitin ligase RNF5 regulates acute colitis through control of S100A8 stability</TITLE>
    <STUDY_REF accession="SRP126860">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP126860</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA422424</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina Single-end sequencing of sample SAMN08177989  TRANSCRIPTOMIC DNA</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS2761362">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS2761362</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN08177989</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>04_KO1_YF</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>PolyA RNA was used with the NEB Ultra II directional library kit.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>76</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM/>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
